RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 CXCL9Q07325 125 aa11.81□□□□□ -0.52
HDAC9-228ENST00000524023 TRIP13Q15645 432 aaPredicted RBP11.81□□□□□ -0.52
HDAC9-228ENST00000524023 C2CD6Q53TS8 623 aa11.81□□□□□ -0.52
HDAC9-228ENST00000524023 SWSAP1Q6NVH7 229 aa11.81□□□□□ -0.52
HDAC9-228ENST00000524023 TAX1BP1Q86VP1 789 aa11.81□□□□□ -0.52
HDAC9-228ENST00000524023 FUKQ8N0W3 1084 aa11.81□□□□□ -0.52
HDAC9-228ENST00000524023 ATL2Q8NHH9 583 aa11.81□□□□□ -0.52
HDAC9-228ENST00000524023 IPO4Q8TEX9 1081 aaKnown RBP11.81□□□□□ -0.52
HDAC9-228ENST00000524023 ATG4CQ96DT6 458 aa11.81□□□□□ -0.52
HDAC9-228ENST00000524023 IFT74Q96LB3 600 aa11.81□□□□□ -0.52
HDAC9-228ENST00000524023 HOMER3Q9NSC5 361 aa11.81□□□□□ -0.52
HDAC9-228ENST00000524023 SAMD15Q9P1V8 674 aa11.81□□□□□ -0.52
HDAC9-228ENST00000524023 R3HDM2Q9Y2K5 976 aaKnown RBP11.81□□□□□ -0.52
HDAC9-228ENST00000524023 MYH9P35579 1960 aaKnown RBP11.8□□□□□ -0.52
HDAC9-228ENST00000524023 COL11A1P12107 1806 aaPredicted RBP11.8□□□□□ -0.52
HDAC9-228ENST00000524023 UMODL1Q5DID0 1318 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 EXTL3O43909 919 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 RGS20O76081 388 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 PROSCO94903 275 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 TTC4O95801 387 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 GAS8O95995 478 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 HLA-DRAP01903 254 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 PSAPP07602 524 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 FDX1P10109 184 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 CAV1Q03135 178 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 PTP4A2Q12974 167 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 XRCC4Q13426 336 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 PSMD6Q15008 389 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 ZACNQ401N2 412 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 WDR44Q5JSH3 913 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 MON1BQ7L1V2 547 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.8□□□□□ -0.52
HDAC9-228ENST00000524023 ARHGEF2Q92974 986 aaKnown RBP11.8□□□□□ -0.52
HDAC9-228ENST00000524023 ELAC2Q9BQ52 826 aaKnown RBP11.8□□□□□ -0.52
HDAC9-228ENST00000524023 VPS33BQ9H267 617 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 ATP6V0A4Q9HBG4 840 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 KIAA1586Q9HCI6 787 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 CYP26B1Q9NR63 512 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 GINM1Q9NU53 330 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 HAUS2Q9NVX0 235 aa11.8□□□□□ -0.52
HDAC9-228ENST00000524023 SEPT9Q9UHD8 586 aaPredicted RBP11.8□□□□□ -0.52
HDAC9-228ENST00000524023 TNS1Q9HBL0 1735 aaKnown RBP11.8□□□□□ -0.52
HDAC9-228ENST00000524023 H0YCG3 227 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 DNAJC8O75937 253 aaPredicted RBP11.79□□□□□ -0.52
HDAC9-228ENST00000524023 C4BPAP04003 597 aaKnown RBP11.79□□□□□ -0.52
HDAC9-228ENST00000524023 ATF2P15336 505 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 TNNI1P19237 187 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 LIG4P49917 911 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 WNT7BP56706 349 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 PRKCEQ02156 737 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 KLF1Q13351 362 aaPredicted RBP11.79□□□□□ -0.52
HDAC9-228ENST00000524023 KYNUQ16719 465 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 DAB2IPQ5VWQ8 1189 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 TDRD10Q5VZ19 366 aaKnown RBP11.79□□□□□ -0.52
HDAC9-228ENST00000524023 SPOPLQ6IQ16 392 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 CYB5D1Q6P9G0 228 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 CCDC60Q8IWA6 550 aaPredicted RBP11.79□□□□□ -0.52
HDAC9-228ENST00000524023 FNBP1Q96RU3 617 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 TRAIPQ9BWF2 469 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 HEMGNQ9BXL5 484 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 NSRP1Q9H0G5 558 aaKnown RBP11.79□□□□□ -0.52
HDAC9-228ENST00000524023 POLR3FQ9H1D9 316 aaPredicted RBP11.79□□□□□ -0.52
HDAC9-228ENST00000524023 DNAJC17Q9NVM6 304 aaKnown RBP11.79□□□□□ -0.52
HDAC9-228ENST00000524023 ANAPC5Q9UJX4 755 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 NEU2Q9Y3R4 380 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 O00370 1275 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 PSTPIP1O43586 416 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 SORBS3O60504 671 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 CFHP08603 1231 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 RALAP11233 206 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 CREB1P16220 341 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 ACO1P21399 889 aaKnown RBP11.79□□□□□ -0.52
HDAC9-228ENST00000524023 ATP5DP30049 168 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 ADCY8P40145 1251 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 PIK3CAP42336 1068 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 NLRP11P59045 1033 aaKnown RBP11.79□□□□□ -0.52
HDAC9-228ENST00000524023 SF3A3Q12874 501 aaKnown RBP eCLIP11.79□□□□□ -0.52
HDAC9-228ENST00000524023 VSTM1Q6UX27 236 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 CCDC50Q8IVM0 306 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 SGSM3Q96HU1 749 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 SCLT1Q96NL6 688 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 JPH1Q9HDC5 661 aaPredicted RBP11.79□□□□□ -0.52
HDAC9-228ENST00000524023 SLC9A2Q9UBY0 812 aa11.79□□□□□ -0.52
HDAC9-228ENST00000524023 NFASCO94856 1347 aa11.78□□□□□ -0.52
HDAC9-228ENST00000524023 PTPRJQ12913 1337 aa11.78□□□□□ -0.52
HDAC9-228ENST00000524023 TMEM120BA0PK00 339 aa11.78□□□□□ -0.52
HDAC9-228ENST00000524023 CHUKO15111 745 aa11.78□□□□□ -0.52
HDAC9-228ENST00000524023 TCEA3O75764 348 aa11.78□□□□□ -0.52
HDAC9-228ENST00000524023 VNN1O95497 513 aa11.78□□□□□ -0.52
HDAC9-228ENST00000524023 KCNA3P22001 575 aa11.78□□□□□ -0.52
HDAC9-228ENST00000524023 DSG3P32926 999 aa11.78□□□□□ -0.52
HDAC9-228ENST00000524023 ABCD1P33897 745 aa11.78□□□□□ -0.52
HDAC9-228ENST00000524023 ACOT2P49753 483 aa11.78□□□□□ -0.52
HDAC9-228ENST00000524023 TAS2R40P59535 323 aa11.78□□□□□ -0.52
HDAC9-228ENST00000524023 NOMO3P69849 1222 aa11.78□□□□□ -0.52
HDAC9-228ENST00000524023 SP4Q02446 784 aa11.78□□□□□ -0.52
HDAC9-228ENST00000524023 CCNG2Q16589 344 aa11.78□□□□□ -0.52
HDAC9-228ENST00000524023 LIN9Q5TKA1 542 aa11.78□□□□□ -0.52
HDAC9-228ENST00000524023 ABHD15Q6UXT9 468 aa11.78□□□□□ -0.52
HDAC9-228ENST00000524023 RHOT1Q8IXI2 618 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms