RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 RECQLP46063 649 aaPredicted RBP4.91□□□□□ -1.62
NUP54-212ENST00000513248 SLC6A9P48067 706 aa4.91□□□□□ -1.62
NUP54-212ENST00000513248 SEPT2Q15019 361 aa4.91□□□□□ -1.62
NUP54-212ENST00000513248 USP39Q53GS9 565 aaKnown RBP4.91□□□□□ -1.62
NUP54-212ENST00000513248 MUM1L1Q5H9M0 696 aa4.91□□□□□ -1.62
NUP54-212ENST00000513248 FAM111BQ6SJ93 734 aa4.91□□□□□ -1.62
NUP54-212ENST00000513248 AMOTL1Q8IY63 956 aa4.91□□□□□ -1.62
NUP54-212ENST00000513248 CMTM4Q8IZR5 234 aa4.91□□□□□ -1.62
NUP54-212ENST00000513248 CEP89Q96ST8 783 aa4.91□□□□□ -1.62
NUP54-212ENST00000513248 RTFDC1Q9BY42 306 aaPredicted RBP4.91□□□□□ -1.62
NUP54-212ENST00000513248 RBM12Q9NTZ6 932 aaKnown RBP4.91□□□□□ -1.62
NUP54-212ENST00000513248 TRPS1Q9UHF7 1281 aa4.91□□□□□ -1.62
NUP54-212ENST00000513248 SIK3Q9Y2K2 1263 aa4.91□□□□□ -1.62
NUP54-212ENST00000513248 METP08581 1390 aa4.91□□□□□ -1.62
NUP54-212ENST00000513248 ATRNL1Q5VV63 1379 aa4.91□□□□□ -1.62
NUP54-212ENST00000513248 CLTCL1P53675 1640 aa4.9□□□□□ -1.62
NUP54-212ENST00000513248 FAM135BQ49AJ0 1406 aa4.9□□□□□ -1.62
NUP54-212ENST00000513248 NRP1O14786 923 aa4.9□□□□□ -1.63
NUP54-212ENST00000513248 CYP27B1O15528 508 aa4.9□□□□□ -1.63
NUP54-212ENST00000513248 AKAP10O43572 662 aa4.9□□□□□ -1.63
NUP54-212ENST00000513248 GASTP01350 101 aa4.9□□□□□ -1.63
NUP54-212ENST00000513248 EPHB1P54762 984 aa4.9□□□□□ -1.63
NUP54-212ENST00000513248 ADKP55263 362 aaKnown RBP4.9□□□□□ -1.63
NUP54-212ENST00000513248 NPEPPSP55786 919 aa4.9□□□□□ -1.63
NUP54-212ENST00000513248 NFE2Q16621 373 aaPredicted RBP4.9□□□□□ -1.63
NUP54-212ENST00000513248 FKBP15Q5T1M5 1219 aa4.9□□□□□ -1.63
NUP54-212ENST00000513248 GJC2Q5T442 439 aaPredicted RBP4.9□□□□□ -1.63
NUP54-212ENST00000513248 SPTY2D1Q68D10 685 aaPredicted RBP4.9□□□□□ -1.63
NUP54-212ENST00000513248 IGFL4Q6B9Z1 124 aa4.9□□□□□ -1.63
NUP54-212ENST00000513248 ANKRD35Q8N283 1001 aa4.9□□□□□ -1.63
NUP54-212ENST00000513248 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.9□□□□□ -1.63
NUP54-212ENST00000513248 ARL8AQ96BM9 186 aa4.9□□□□□ -1.63
NUP54-212ENST00000513248 COA7Q96BR5 231 aa4.9□□□□□ -1.63
NUP54-212ENST00000513248 HOOK2Q96ED9 719 aa4.9□□□□□ -1.63
NUP54-212ENST00000513248 RHOBTB2Q9BYZ6 727 aa4.9□□□□□ -1.63
NUP54-212ENST00000513248 DMRT3Q9NQL9 472 aa4.9□□□□□ -1.63
NUP54-212ENST00000513248 POGKQ9P215 609 aa4.9□□□□□ -1.63
NUP54-212ENST00000513248 SERPINB13Q9UIV8 391 aa4.9□□□□□ -1.63
NUP54-212ENST00000513248 GIT1Q9Y2X7 761 aa4.9□□□□□ -1.63
NUP54-212ENST00000513248 STRCP1A6NGW2 1772 aa4.9□□□□□ -1.63
NUP54-212ENST00000513248 ANKRD30BQ9BXX2 1392 aa4.9□□□□□ -1.63
NUP54-212ENST00000513248 NCOA3Q9Y6Q9 1424 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 MYO5BQ9ULV0 1848 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 PHF2O75151 1096 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 CRHR1P34998 444 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 SREBF1P36956 1147 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 RAB27AP51159 221 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 INHBCP55103 352 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 CCT2P78371 535 aaKnown RBP4.89□□□□□ -1.63
NUP54-212ENST00000513248 MRPL49Q13405 166 aaKnown RBP4.89□□□□□ -1.63
NUP54-212ENST00000513248 ELAVL1Q15717 326 aaKnown RBP4.89□□□□□ -1.63
NUP54-212ENST00000513248 MFSD5Q6N075 450 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 GPRIN1Q7Z2K8 1008 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 PRR18Q8N4B5 295 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 EXTL1Q92935 676 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 MIEF2Q96C03 454 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 NUP88Q99567 741 aaPredicted RBP4.89□□□□□ -1.63
NUP54-212ENST00000513248 SMAD5Q99717 465 aaKnown RBP4.89□□□□□ -1.63
NUP54-212ENST00000513248 CDH19Q9H159 772 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 CSRNP2Q9H175 543 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 IKZF4Q9H2S9 585 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 BCO1Q9HAY6 547 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 GPRC5DQ9NZD1 345 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 HECAQ9UBI9 543 aaPredicted RBP4.89□□□□□ -1.63
NUP54-212ENST00000513248 RGS17Q9UGC6 210 aaPredicted RBP4.89□□□□□ -1.63
NUP54-212ENST00000513248 LIMCH1Q9UPQ0 1083 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 NWD1Q149M9 1564 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 ADGRF5Q8IZF2 1346 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 JCADQ9P266 1359 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 PTPRUQ92729 1446 aa4.89□□□□□ -1.63
NUP54-212ENST00000513248 KIF1BO60333 1816 aa4.88□□□□□ -1.63
NUP54-212ENST00000513248 NEXMIFQ5QGS0 1516 aa4.88□□□□□ -1.63
NUP54-212ENST00000513248 MED1Q15648 1581 aaPredicted RBP4.88□□□□□ -1.63
NUP54-212ENST00000513248 SETBP1Q9Y6X0 1596 aa4.88□□□□□ -1.63
NUP54-212ENST00000513248 E2F8A0AVK6 867 aa4.88□□□□□ -1.63
NUP54-212ENST00000513248 KRTAP23-1A1A580 65 aa4.88□□□□□ -1.63
NUP54-212ENST00000513248 HTRA2O43464 458 aaPredicted RBP4.88□□□□□ -1.63
NUP54-212ENST00000513248 RFPL1O75677 317 aa4.88□□□□□ -1.63
NUP54-212ENST00000513248 GSPT1P15170 499 aaKnown RBP4.88□□□□□ -1.63
NUP54-212ENST00000513248 GUCY1A2P33402 732 aa4.88□□□□□ -1.63
NUP54-212ENST00000513248 PIN1Q13526 163 aaPredicted RBP4.88□□□□□ -1.63
NUP54-212ENST00000513248 CSRP2Q16527 193 aa4.88□□□□□ -1.63
NUP54-212ENST00000513248 LSM12Q3MHD2 195 aaKnown RBP4.88□□□□□ -1.63
NUP54-212ENST00000513248 ODR4Q5SWX8 454 aa4.88□□□□□ -1.63
NUP54-212ENST00000513248 BRINP3Q76B58 766 aa4.88□□□□□ -1.63
NUP54-212ENST00000513248 ZBTB46Q86UZ6 589 aa4.88□□□□□ -1.63
NUP54-212ENST00000513248 C1orf210Q8IVY1 113 aa4.88□□□□□ -1.63
NUP54-212ENST00000513248 OR7D4Q8NG98 312 aa4.88□□□□□ -1.63
NUP54-212ENST00000513248 NRG4Q8WWG1 115 aa4.88□□□□□ -1.63
NUP54-212ENST00000513248 LRRC59Q96AG4 307 aaKnown RBP4.88□□□□□ -1.63
NUP54-212ENST00000513248 ZNF512Q96ME7 567 aaPredicted RBP4.88□□□□□ -1.63
NUP54-212ENST00000513248 KCNH6Q9H252 994 aa4.88□□□□□ -1.63
NUP54-212ENST00000513248 AURKAIP1Q9NWT8 199 aaPredicted RBP4.88□□□□□ -1.63
NUP54-212ENST00000513248 MRFAP1Q9Y605 127 aa4.88□□□□□ -1.63
NUP54-212ENST00000513248 DHX57Q6P158 1386 aaKnown RBP4.88□□□□□ -1.63
NUP54-212ENST00000513248 ROBO1Q9Y6N7 1651 aa4.87□□□□□ -1.63
NUP54-212ENST00000513248 PLSCR1O15162 318 aa4.87□□□□□ -1.63
NUP54-212ENST00000513248 HOXA3O43365 443 aaPredicted RBP4.87□□□□□ -1.63
NUP54-212ENST00000513248 PRAMEF4O60810 478 aa4.87□□□□□ -1.63
NUP54-212ENST00000513248 ITGA10O75578 1167 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms