RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 CNTN3Q9P232 1028 aa12.63□□□□□ -0.39
HMGCS1-204ENST00000507293 ANK1P16157 1881 aa12.63□□□□□ -0.39
HMGCS1-204ENST00000507293 WDR27A2RRH5 827 aa12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 H3BQV1 296 aa12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 TOM1L1O75674 476 aa12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 DCNP07585 359 aaKnown RBP12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 MAPTP10636 758 aaKnown RBP12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 GJB2P29033 226 aa12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 SLC12A3P55017 1021 aa12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 ARPP19P56211 112 aa12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 CACNB1Q02641 598 aaPredicted RBP12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 NOLC1Q14978 699 aaKnown RBP eCLIP12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 TMEM119Q4V9L6 283 aa12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 SEZ6Q53EL9 994 aa12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 SLC8B1Q6J4K2 584 aa12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 RTL10Q7L3V2 364 aa12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 SYT2Q8N9I0 419 aaPredicted RBP12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 TMEM161BQ8NDZ6 487 aa12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 SPIRE2Q8WWL2 714 aa12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 CDK5RAP3Q96JB5 506 aa12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 KXD1Q9BQD3 176 aa12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 NTPCRQ9BSD7 190 aaKnown RBP12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 FOXQ1Q9C009 403 aa12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 KCNH3Q9ULD8 1083 aa12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 MRPS23Q9Y3D9 190 aaKnown RBP12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 NUB1Q9Y5A7 615 aa12.62□□□□□ -0.39
HMGCS1-204ENST00000507293 TSC2P49815 1807 aa12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 NPHP3-ACAD11A0A0J9YXS1 232 aa12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 PRRG1O14668 218 aa12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 SYN3O14994 580 aa12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 CD2BP2O95400 341 aaKnown RBP12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 LRG1P02750 347 aa12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 RHOP08100 348 aa12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 PLA2G4BP0C869 781 aa12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 CXCL8P10145 99 aa12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 ELF1P32519 619 aa12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 RPL9P32969 192 aaKnown RBP12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 MCM4P33991 863 aa12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 SMTNP53814 917 aa12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 SLC5A9Q2M3M2 681 aa12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 SLC10A6Q3KNW5 377 aa12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 ZPBP2Q6X784 338 aa12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 ZNF461Q8TAF7 563 aa12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 DLGAP2Q9P1A6 1054 aa12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 TUBGCP4Q9UGJ1 667 aa12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 FBXL5Q9UKA1 691 aa12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 SIT1Q9Y3P8 196 aa12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 ZFHX2Q9C0A1 2572 aaPredicted RBP12.61□□□□□ -0.39
HMGCS1-204ENST00000507293 COL4A2P08572 1712 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 ARHGEF37A1IGU5 675 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 H7C4K7 107 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 CLDN3O15551 220 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 TBC1D4O60343 1298 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 ABLIM3O94929 683 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 CEBPBP17676 345 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 MATR3P43243 847 aaKnown RBP eCLIP12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 STARD6P59095 220 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 SNW1Q13573 536 aaKnown RBP12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 MRPL58Q14197 206 aaKnown RBP12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 MLF2Q15773 248 aaPredicted RBP12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 CTXN3Q4LDR2 81 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 ARL6IP4Q66PJ3 421 aaKnown RBP12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 TMEM130Q8N3G9 435 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 KCTD17Q8N5Z5 321 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 PJA1Q8NG27 643 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 DDX12PQ92771 950 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 MCRS1Q96EZ8 462 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 BICD1Q96G01 975 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 SHDQ96IW2 340 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 SUSD3Q96L08 255 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 TBC1D32Q96NH3 1257 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 CYP4F11Q9HBI6 524 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 KCND2Q9NZV8 630 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 KCNG1Q9UIX4 513 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 TICRRQ7Z2Z1 1910 aa12.6□□□□□ -0.39
HMGCS1-204ENST00000507293 TCHHQ07283 1943 aa12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 LRRN2O75325 713 aa12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 SEC24AO95486 1093 aa12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 ATF2P15336 505 aa12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 PTPN2P17706 415 aa12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 NCKAP1LP55160 1127 aa12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 SPAG1Q07617 926 aa12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 MCL1Q07820 350 aa12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 ARSHQ5FYA8 562 aa12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 ZNF280DQ6N043 979 aa12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 TCEAL8Q8IYN2 117 aa12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 ADSSL1Q8N142 457 aa12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 CORO1BQ9BR76 489 aa12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 REEP2Q9BRK0 252 aa12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 HAPLN2Q9GZV7 340 aa12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 AVENQ9NQS1 362 aaPredicted RBP12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 LARSQ9P2J5 1176 aaKnown RBP12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 PCDHB8Q9UN66 801 aa12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 SMC3Q9UQE7 1217 aa12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 INSL5Q9Y5Q6 135 aa12.59□□□□□ -0.39
HMGCS1-204ENST00000507293 FAM186AA6NE01 2351 aa12.58□□□□□ -0.4
HMGCS1-204ENST00000507293 KANSL1LA0AUZ9 987 aa12.58□□□□□ -0.4
HMGCS1-204ENST00000507293 H0YCG3 227 aa12.58□□□□□ -0.4
HMGCS1-204ENST00000507293 ECI2O75521 394 aa12.58□□□□□ -0.4
HMGCS1-204ENST00000507293 GLULP15104 373 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms