RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 CPA5Q8WXQ8 436 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 SEPT1Q8WYJ6 367 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 MYCP01106 439 aaPredicted RBP17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 FUT2Q10981 343 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 WDR72Q3MJ13 1102 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 CDR2LQ86X02 465 aaPredicted RBP17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 PYROXD1Q8WU10 500 aa17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 TARS2Q9BW92 718 aaKnown RBP17.25■□□□□ 0.35
CCDC88B-209ENST00000494080 UBE4BO95155 1302 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 RCCD1A6NED2 376 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 GNAT1P11488 350 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 TBXAS1P24557 533 aaPredicted RBP17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 KCNJ1P48048 391 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 ZNF844Q08AG5 666 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 EMC2Q15006 297 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 LRRC71Q8N4P6 559 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 NAF1Q96HR8 494 aaKnown RBP17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 CBWD1Q9BRT8 395 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 IDI2Q9BXS1 227 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 FAM198AQ9UFP1 575 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 MED1Q15648 1581 aaPredicted RBP17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 OPLAHO14841 1288 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 GSTA1P08263 222 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 ITIH4Q14624 930 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 RSPH3Q86UC2 560 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 C9orf72Q96LT7 481 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 MKNK1Q9BUB5 465 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 SLC4A7Q9Y6M7 1214 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 RNF225M0QZC1 329 aaPredicted RBP17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 TRAPPC3O43617 180 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 ARFIP2P53365 341 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 ERVK-9P63128 1117 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 GLIS3Q8NEA6 775 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 NKX2-3Q8TAU0 364 aa17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 FAM193BQ96PV7 902 aaPredicted RBP17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 PAPOLBQ9NRJ5 636 aaKnown RBP17.24■□□□□ 0.35
CCDC88B-209ENST00000494080 PRKCBP05771 671 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 IL17AQ16552 155 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 SPOUT1Q5T280 376 aaKnown RBP17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 CENPUQ71F23 418 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 EPS8L3Q8TE67 593 aaKnown RBP17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 C2orf40Q9H1Z8 148 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 ZBTB39O15060 712 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 SLC26A4O43511 780 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 TJP3O95049 919 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 ZWINTO95229 277 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 PON1P27169 355 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 TM4SF1P30408 202 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 PSMC1P62191 440 aaKnown RBP17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 KRT17Q04695 432 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 NR1H3Q13133 447 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 PDCD2Q16342 344 aaPredicted RBP17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 KYNUQ16719 465 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 SMYD3Q9H7B4 428 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 NDE1Q9NXR1 346 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 NAGPAQ9UK23 515 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 GOLGA8MH3BSY2 632 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 WNT10BO00744 389 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 RTN2O75298 545 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 SNUPNO95149 360 aaKnown RBP17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 VCAM1P19320 739 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 ALG13Q9NP73 1137 aaKnown RBP17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 GINM1Q9NU53 330 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 SUCLA2Q9P2R7 463 aaPredicted RBP17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 SEZ6Q53EL9 994 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 ENOSF1Q7L5Y1 443 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 CBWD2Q8IUF1 395 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 CCDC117Q8IWD4 279 aaPredicted RBP17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 ARHGAP18Q8N392 663 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 C2orf69Q8N8R5 385 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 TIPINQ9BVW5 301 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 THEGQ9P2T0 379 aa17.23■□□□□ 0.35
CCDC88B-209ENST00000494080 CDH16O75309 829 aa17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 MYL3P08590 195 aa17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 GHRP10912 638 aa17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 RPS12P25398 132 aaKnown RBP17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 ARL4AP40617 200 aa17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 ELF3P78545 371 aaPredicted RBP17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 TWF2Q6IBS0 349 aaKnown RBP17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 PDZD4Q76G19 769 aaPredicted RBP17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 FBXO25Q8TCJ0 367 aa17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 KLHL11Q9NVR0 708 aa17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 PI4K2BG5E9Z4 385 aa17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 TARSP26639 723 aaKnown RBP17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 EPHB1P54762 984 aa17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 ITKQ08881 620 aa17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 HEY1Q9Y5J3 304 aa17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 TACC3Q9Y6A5 838 aa17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 PFASO15067 1338 aa17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 ATRNO75882 1429 aa17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 SPECC1L-ADORA2AF8WAN1 911 aa17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 M0QYV0 167 aa17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 FOXN3O00409 490 aaPredicted RBP17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 ACTR2P61160 394 aa17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 KIF22Q14807 665 aa17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 SPON1Q9HCB6 807 aa17.22■□□□□ 0.35
CCDC88B-209ENST00000494080 PHF2O75151 1096 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 CALB1P05937 261 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 BACE1P56817 501 aa17.21■□□□□ 0.35
CCDC88B-209ENST00000494080 MRPS9P82933 396 aaKnown RBP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms