RNA–Protein interactions for RNA: ENST00000487461.1

VPS16-208, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 634 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-208ENST00000487461 RIF1Q5UIP0 2472 aaKnown RBP13.35□□□□□ -0.27
VPS16-208ENST00000487461 PRR23AA6NEV1 266 aa13.34□□□□□ -0.27
VPS16-208ENST00000487461 H3BQV1 296 aa13.34□□□□□ -0.27
VPS16-208ENST00000487461 TOM1L1O75674 476 aa13.34□□□□□ -0.27
VPS16-208ENST00000487461 ABLIM3O94929 683 aa13.34□□□□□ -0.27
VPS16-208ENST00000487461 RPL9P32969 192 aaKnown RBP13.34□□□□□ -0.27
VPS16-208ENST00000487461 SMTNP53814 917 aa13.34□□□□□ -0.27
VPS16-208ENST00000487461 CACNB1Q02641 598 aaPredicted RBP13.34□□□□□ -0.27
VPS16-208ENST00000487461 STRN3Q13033 797 aa13.34□□□□□ -0.27
VPS16-208ENST00000487461 MRPL58Q14197 206 aaKnown RBP13.34□□□□□ -0.27
VPS16-208ENST00000487461 TMEM119Q4V9L6 283 aa13.34□□□□□ -0.27
VPS16-208ENST00000487461 PABPC1LQ4VXU2 614 aaKnown RBP13.34□□□□□ -0.27
VPS16-208ENST00000487461 ARL6IP4Q66PJ3 421 aaKnown RBP13.34□□□□□ -0.27
VPS16-208ENST00000487461 PHLDB3Q6NSJ2 640 aa13.34□□□□□ -0.27
VPS16-208ENST00000487461 POTEHQ6S545 545 aa13.34□□□□□ -0.27
VPS16-208ENST00000487461 TMEM130Q8N3G9 435 aa13.34□□□□□ -0.27
VPS16-208ENST00000487461 ZNF461Q8TAF7 563 aa13.34□□□□□ -0.27
VPS16-208ENST00000487461 HAPLN2Q9GZV7 340 aa13.34□□□□□ -0.27
VPS16-208ENST00000487461 ARHGEF3Q9NR81 526 aa13.34□□□□□ -0.27
VPS16-208ENST00000487461 KCNG1Q9UIX4 513 aa13.34□□□□□ -0.27
VPS16-208ENST00000487461 WDR27A2RRH5 827 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 SYN3O14994 580 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 SEC24AO95486 1093 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 DCNP07585 359 aaKnown RBP13.33□□□□□ -0.28
VPS16-208ENST00000487461 RHOP08100 348 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 RFX1P22670 979 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 ARPP19P56211 112 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 ROR1Q01973 937 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 MCL1Q07820 350 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 NOLC1Q14978 699 aaKnown RBP eCLIP13.33□□□□□ -0.28
VPS16-208ENST00000487461 SPECC1Q5M775 1068 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 ZPBP2Q6X784 338 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 NPAS3Q8IXF0 933 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 LRRC15Q8TF66 581 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 ING5Q8WYH8 240 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 CDK5RAP3Q96JB5 506 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 SUSD3Q96L08 255 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 KCND2Q9NZV8 630 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 DLGAP2Q9P1A6 1054 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 ANKFY1Q9P2R3 1169 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 KCNH3Q9ULD8 1083 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 MRPS23Q9Y3D9 190 aaKnown RBP13.33□□□□□ -0.28
VPS16-208ENST00000487461 SIT1Q9Y3P8 196 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 NUB1Q9Y5A7 615 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 NOTCH4Q99466 2003 aa13.33□□□□□ -0.28
VPS16-208ENST00000487461 ARHGEF37A1IGU5 675 aa13.32□□□□□ -0.28
VPS16-208ENST00000487461 H7C4K7 107 aa13.32□□□□□ -0.28
VPS16-208ENST00000487461 CLDN3O15551 220 aa13.32□□□□□ -0.28
VPS16-208ENST00000487461 ELF1P32519 619 aa13.32□□□□□ -0.28
VPS16-208ENST00000487461 STARD6P59095 220 aa13.32□□□□□ -0.28
VPS16-208ENST00000487461 SPAG1Q07617 926 aa13.32□□□□□ -0.28
VPS16-208ENST00000487461 SNW1Q13573 536 aaKnown RBP13.32□□□□□ -0.28
VPS16-208ENST00000487461 SLC5A9Q2M3M2 681 aa13.32□□□□□ -0.28
VPS16-208ENST00000487461 SLC44A4Q53GD3 710 aa13.32□□□□□ -0.28
VPS16-208ENST00000487461 MTSS1LQ765P7 747 aa13.32□□□□□ -0.28
VPS16-208ENST00000487461 NKD2Q969F2 451 aaPredicted RBP13.32□□□□□ -0.28
VPS16-208ENST00000487461 MCRS1Q96EZ8 462 aa13.32□□□□□ -0.28
VPS16-208ENST00000487461 TBC1D32Q96NH3 1257 aa13.32□□□□□ -0.28
VPS16-208ENST00000487461 KXD1Q9BQD3 176 aa13.32□□□□□ -0.28
VPS16-208ENST00000487461 PLA2G2FQ9BZM2 168 aa13.32□□□□□ -0.28
VPS16-208ENST00000487461 FOXQ1Q9C009 403 aa13.32□□□□□ -0.28
VPS16-208ENST00000487461 AVENQ9NQS1 362 aaPredicted RBP13.32□□□□□ -0.28
VPS16-208ENST00000487461 TUBGCP4Q9UGJ1 667 aa13.32□□□□□ -0.28
VPS16-208ENST00000487461 FBXL5Q9UKA1 691 aa13.32□□□□□ -0.28
VPS16-208ENST00000487461 SMC3Q9UQE7 1217 aa13.32□□□□□ -0.28
VPS16-208ENST00000487461 MYO15AQ9UKN7 3530 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 TTC26A0AVF1 554 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 PRRG1O14668 218 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 LRRN2O75325 713 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 CXCL8P10145 99 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 GLULP15104 373 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 ATF2P15336 505 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 PTPN2P17706 415 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 NCKAP1LP55160 1127 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 GRIN1Q05586 938 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 ZBTB6Q15916 424 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 CTXN3Q4LDR2 81 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 LARP1BQ659C4 914 aaKnown RBP13.31□□□□□ -0.28
VPS16-208ENST00000487461 HAUS6Q7Z4H7 955 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 TCEAL8Q8IYN2 117 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 DDX12PQ92771 950 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 KCNN1Q92952 543 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 SHDQ96IW2 340 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 PLEKHA5Q9HAU0 1116 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 CYP4F11Q9HBI6 524 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 BLOC1S4Q9NUP1 217 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 FAM186AA6NE01 2351 aa13.31□□□□□ -0.28
VPS16-208ENST00000487461 DMDP11532 3685 aa13.3□□□□□ -0.28
VPS16-208ENST00000487461 LACTBL1A8MY62 500 aa13.3□□□□□ -0.28
VPS16-208ENST00000487461 NRG2O14511 850 aaPredicted RBP13.3□□□□□ -0.28
VPS16-208ENST00000487461 SLC26A4O43511 780 aa13.3□□□□□ -0.28
VPS16-208ENST00000487461 LRG1P02750 347 aa13.3□□□□□ -0.28
VPS16-208ENST00000487461 CLTAP09496 248 aa13.3□□□□□ -0.28
VPS16-208ENST00000487461 CEBPBP17676 345 aa13.3□□□□□ -0.28
VPS16-208ENST00000487461 MCM4P33991 863 aa13.3□□□□□ -0.28
VPS16-208ENST00000487461 UBA7P41226 1012 aa13.3□□□□□ -0.28
VPS16-208ENST00000487461 TNFSF9P41273 254 aa13.3□□□□□ -0.28
VPS16-208ENST00000487461 MATR3P43243 847 aaKnown RBP eCLIP13.3□□□□□ -0.28
VPS16-208ENST00000487461 MCM2P49736 904 aa13.3□□□□□ -0.28
VPS16-208ENST00000487461 ADCY1Q08828 1119 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms