RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 EVI5O60447 810 aa15.3■□□□□ 0.04
CUX1-209ENST00000487284 ZC3H11AO75152 810 aaKnown RBP eCLIP15.3■□□□□ 0.04
CUX1-209ENST00000487284 GFPT2O94808 682 aa15.3■□□□□ 0.04
CUX1-209ENST00000487284 FAM228BP0C875 321 aa15.3■□□□□ 0.04
CUX1-209ENST00000487284 PNMA6AP0CW24 399 aaPredicted RBP15.3■□□□□ 0.04
CUX1-209ENST00000487284 HARSP12081 509 aaKnown RBP15.3■□□□□ 0.04
CUX1-209ENST00000487284 SELPP16109 830 aa15.3■□□□□ 0.04
CUX1-209ENST00000487284 HOXA11P31270 313 aaPredicted RBP15.3■□□□□ 0.04
CUX1-209ENST00000487284 CASQ1P31415 396 aa15.3■□□□□ 0.04
CUX1-209ENST00000487284 PCBP1Q15365 356 aaKnown RBP eCLIP15.3■□□□□ 0.04
CUX1-209ENST00000487284 ZNF568Q3ZCX4 644 aa15.3■□□□□ 0.04
CUX1-209ENST00000487284 LRRC8DQ7L1W4 858 aa15.3■□□□□ 0.04
CUX1-209ENST00000487284 ZNF571Q7Z3V5 609 aaPredicted RBP15.3■□□□□ 0.04
CUX1-209ENST00000487284 ZBTB33Q86T24 672 aa15.3■□□□□ 0.04
CUX1-209ENST00000487284 TXLNBQ8N3L3 684 aa15.3■□□□□ 0.04
CUX1-209ENST00000487284 TCHPQ9BT92 498 aa15.3■□□□□ 0.04
CUX1-209ENST00000487284 PPP1R12CQ9BZL4 782 aa15.3■□□□□ 0.04
CUX1-209ENST00000487284 PDZD7Q9H5P4 517 aa15.3■□□□□ 0.04
CUX1-209ENST00000487284 UBE2TQ9NPD8 197 aaPredicted RBP15.3■□□□□ 0.04
CUX1-209ENST00000487284 RAB20Q9NX57 234 aa15.3■□□□□ 0.04
CUX1-209ENST00000487284 CPSF3Q9UKF6 684 aaKnown RBP15.3■□□□□ 0.04
CUX1-209ENST00000487284 TBX21Q9UL17 535 aa15.3■□□□□ 0.04
CUX1-209ENST00000487284 NENFQ9UMX5 172 aa15.3■□□□□ 0.04
CUX1-209ENST00000487284 PIN4Q9Y237 131 aaKnown RBP15.3■□□□□ 0.04
CUX1-209ENST00000487284 ATP8B3O60423 1300 aa15.3■□□□□ 0.04
CUX1-209ENST00000487284 A0A1B0GUA9 196 aa15.29■□□□□ 0.04
CUX1-209ENST00000487284 C4BPAP04003 597 aaKnown RBP15.29■□□□□ 0.04
CUX1-209ENST00000487284 CLTBP09497 229 aa15.29■□□□□ 0.04
CUX1-209ENST00000487284 CCDC172P0C7W6 258 aa15.29■□□□□ 0.04
CUX1-209ENST00000487284 CD52P31358 61 aa15.29■□□□□ 0.04
CUX1-209ENST00000487284 GTF2F1P35269 517 aaKnown RBP eCLIP15.29■□□□□ 0.04
CUX1-209ENST00000487284 MAGEA1P43355 309 aa15.29■□□□□ 0.04
CUX1-209ENST00000487284 KIF5AQ12840 1032 aa15.29■□□□□ 0.04
CUX1-209ENST00000487284 NFX1Q12986 1120 aaKnown RBP15.29■□□□□ 0.04
CUX1-209ENST00000487284 ARHGAP44Q17R89 818 aa15.29■□□□□ 0.04
CUX1-209ENST00000487284 ZNF569Q5MCW4 686 aa15.29■□□□□ 0.04
CUX1-209ENST00000487284 ABHD8Q96I13 439 aa15.29■□□□□ 0.04
CUX1-209ENST00000487284 NT5C1BQ96P26 610 aa15.29■□□□□ 0.04
CUX1-209ENST00000487284 SYT11Q9BT88 431 aa15.29■□□□□ 0.04
CUX1-209ENST00000487284 CDT1Q9H211 546 aa15.29■□□□□ 0.04
CUX1-209ENST00000487284 HIPK3Q9H422 1215 aa15.29■□□□□ 0.04
CUX1-209ENST00000487284 LUC7LQ9NQ29 371 aaKnown RBP15.29■□□□□ 0.04
CUX1-209ENST00000487284 PADI3Q9ULW8 664 aa15.29■□□□□ 0.04
CUX1-209ENST00000487284 GUCA1BQ9UMX6 200 aa15.29■□□□□ 0.04
CUX1-209ENST00000487284 ST3GAL5Q9UNP4 418 aa15.29■□□□□ 0.04
CUX1-209ENST00000487284 TFR2Q9UP52 801 aa15.29■□□□□ 0.04
CUX1-209ENST00000487284 TNNI1P19237 187 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 TNFSF9P41273 254 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 AP3M2P53677 418 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 NCBP1Q09161 790 aaKnown RBP15.28■□□□□ 0.04
CUX1-209ENST00000487284 SURF1Q15526 300 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 ENOX2Q16206 610 aaKnown RBP15.28■□□□□ 0.04
CUX1-209ENST00000487284 TDRD10Q5VZ19 366 aaKnown RBP15.28■□□□□ 0.04
CUX1-209ENST00000487284 NOTUMQ6P988 496 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 SLC35F6Q8N357 371 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 OLIG1Q8TAK6 271 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 HELQQ8TDG4 1101 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 KREMEN1Q96MU8 473 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 WNT8AQ9H1J5 351 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 TMEM39AQ9NV64 488 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 TET1Q8NFU7 2136 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 UQCRHLA0A096LP55 91 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 FOXN3O00409 490 aaPredicted RBP15.28■□□□□ 0.04
CUX1-209ENST00000487284 UQCRHP07919 91 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 CYP2C18P33260 490 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 MFAP3P55082 362 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 PAK2Q13177 524 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 BMS1Q14692 1282 aaKnown RBP15.28■□□□□ 0.04
CUX1-209ENST00000487284 SEZ6Q53EL9 994 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 C10orf76Q5T2E6 689 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 LMBRD2Q68DH5 695 aaPredicted RBP15.28■□□□□ 0.04
CUX1-209ENST00000487284 VPS36Q86VN1 386 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 WDR49Q8IV35 697 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 CEP120Q8N960 986 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 USP38Q8NB14 1042 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 SHC3Q92529 594 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 SCLYQ96I15 445 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 ERVK-5Q9HDB9 667 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 ADAMTS1Q9UHI8 967 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 SQORQ9Y6N5 450 aa15.28■□□□□ 0.04
CUX1-209ENST00000487284 GPR182O15218 404 aa15.27■□□□□ 0.03
CUX1-209ENST00000487284 VNN1O95497 513 aa15.27■□□□□ 0.03
CUX1-209ENST00000487284 HLA-DRAP01903 254 aa15.27■□□□□ 0.03
CUX1-209ENST00000487284 MCF2P10911 925 aa15.27■□□□□ 0.03
CUX1-209ENST00000487284 AXLP30530 894 aa15.27■□□□□ 0.03
CUX1-209ENST00000487284 CCL23P55773 120 aa15.27■□□□□ 0.03
CUX1-209ENST00000487284 GCNT1Q02742 428 aa15.27■□□□□ 0.03
CUX1-209ENST00000487284 GPNMBQ14956 572 aa15.27■□□□□ 0.03
CUX1-209ENST00000487284 SLC27A1Q6PCB7 646 aa15.27■□□□□ 0.03
CUX1-209ENST00000487284 ENOSF1Q7L5Y1 443 aa15.27■□□□□ 0.03
CUX1-209ENST00000487284 THNSL1Q8IYQ7 743 aa15.27■□□□□ 0.03
CUX1-209ENST00000487284 FAM71AQ8IYT1 594 aa15.27■□□□□ 0.03
CUX1-209ENST00000487284 PPM1KQ8N3J5 372 aa15.27■□□□□ 0.03
CUX1-209ENST00000487284 SLC30A5Q8TAD4 765 aa15.27■□□□□ 0.03
CUX1-209ENST00000487284 KAT5Q92993 513 aa15.27■□□□□ 0.03
CUX1-209ENST00000487284 FAM84AQ96KN4 292 aa15.27■□□□□ 0.03
CUX1-209ENST00000487284 FAM81BQ96LP2 452 aa15.27■□□□□ 0.03
CUX1-209ENST00000487284 ADPGKQ9BRR6 497 aa15.27■□□□□ 0.03
CUX1-209ENST00000487284 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.27■□□□□ 0.03
CUX1-209ENST00000487284 EIF2AQ9BY44 585 aaKnown RBP15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms