RNA–Protein interactions for RNA: ENST00000468949.1

HDAC6-216, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-216ENST00000468949 TMEM8AQ9HCN3 771 aa8.78□□□□□ -1
HDAC6-216ENST00000468949 MTMR10Q9NXD2 777 aa8.78□□□□□ -1
HDAC6-216ENST00000468949 CXXC1Q9P0U4 656 aaPredicted RBP8.78□□□□□ -1
HDAC6-216ENST00000468949 CNTN3Q9P232 1028 aa8.78□□□□□ -1
HDAC6-216ENST00000468949 KANSL3Q9P2N6 904 aa8.78□□□□□ -1
HDAC6-216ENST00000468949 UBQLN1Q9UMX0 589 aaKnown RBP8.78□□□□□ -1
HDAC6-216ENST00000468949 DERAQ9Y315 318 aa8.78□□□□□ -1
HDAC6-216ENST00000468949 C2CD2Q9Y426 696 aa8.78□□□□□ -1
HDAC6-216ENST00000468949 LAMA3Q16787 3333 aa8.78□□□□□ -1
HDAC6-216ENST00000468949 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.77□□□□□ -1.01
HDAC6-216ENST00000468949 TTC26A0AVF1 554 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 LGALS16A8MUM7 142 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 GOLGA6L6A8MZA4 724 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 FAM189A1O60320 539 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 TPM1P09493 284 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 ATP1A3P13637 1013 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 ATP2A2P16615 1042 aaKnown RBP8.77□□□□□ -1.01
HDAC6-216ENST00000468949 ZNF18P17022 549 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 ATF7P17544 494 aaPredicted RBP8.77□□□□□ -1.01
HDAC6-216ENST00000468949 GCLMP48507 274 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 UBXN1Q04323 297 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 KCNH2Q12809 1159 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 SLC10A6Q3KNW5 377 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 PAN2Q504Q3 1202 aaKnown RBP8.77□□□□□ -1.01
HDAC6-216ENST00000468949 WDR44Q5JSH3 913 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 KRT39Q6A163 491 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 CRELD2Q6UXH1 353 aaPredicted RBP8.77□□□□□ -1.01
HDAC6-216ENST00000468949 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.77□□□□□ -1.01
HDAC6-216ENST00000468949 AGMOQ6ZNB7 445 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 PARD3BQ8TEW8 1205 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 TIFAQ96CG3 184 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 VWCEQ96DN2 955 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 ZFP42Q96MM3 310 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 ZNF560Q96MR9 790 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 PBX4Q9BYU1 374 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 TMEM117Q9H0C3 514 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 NDST4Q9H3R1 872 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 GRPEL1Q9HAV7 217 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 IFNKQ9P0W0 207 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 GCNT4Q9P109 453 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 LIMA1Q9UHB6 759 aaKnown RBP8.77□□□□□ -1.01
HDAC6-216ENST00000468949 ITGA11Q9UKX5 1188 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 STXBP5LQ9Y2K9 1186 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 PTPRSQ13332 1948 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 COL4A4P53420 1690 aaPredicted RBP8.77□□□□□ -1.01
HDAC6-216ENST00000468949 COL4A6Q14031 1691 aa8.77□□□□□ -1.01
HDAC6-216ENST00000468949 SMIM28A0A1B0GU29 152 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 CARNS1A5YM72 827 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 P4HA2O15460 535 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 ZC3H11AO75152 810 aaKnown RBP eCLIP8.76□□□□□ -1.01
HDAC6-216ENST00000468949 POMCP01189 267 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 ITGB3P05106 788 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 P4HA1P13674 534 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 KCNE1P15382 129 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 FMO5P49326 533 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 MRE11P49959 708 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 DLG4P78352 724 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 FAM189BP81408 668 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 DEFB103AP81534 67 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 MYO1EQ12965 1108 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 BTG3Q14201 252 aaPredicted RBP8.76□□□□□ -1.01
HDAC6-216ENST00000468949 TCTN1Q2MV58 587 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 PPP1R15BQ5SWA1 713 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 GBP6Q6ZN66 633 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 ZNF598Q86UK7 904 aaKnown RBP8.76□□□□□ -1.01
HDAC6-216ENST00000468949 RTN4RL1Q86UN2 441 aaPredicted RBP8.76□□□□□ -1.01
HDAC6-216ENST00000468949 IRF2BP1Q8IU81 584 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 DRC7Q8IY82 874 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 FBXL13Q8NEE6 735 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 SLC35C1Q96A29 364 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 FAM161BQ96MY7 647 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 UROC1Q96N76 676 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 GUCD1Q96NT3 240 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 POP1Q99575 1024 aaKnown RBP8.76□□□□□ -1.01
HDAC6-216ENST00000468949 TMEM121BQ9BXQ6 578 aaPredicted RBP8.76□□□□□ -1.01
HDAC6-216ENST00000468949 INTS13Q9NVM9 706 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 DPP3Q9NY33 737 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 MSRAQ9UJ68 235 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 METRNQ9UJH8 293 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 MICAL3Q7RTP6 2002 aa8.76□□□□□ -1.01
HDAC6-216ENST00000468949 RALGAPA2Q2PPJ7 1873 aa8.75□□□□□ -1.01
HDAC6-216ENST00000468949 ARHGEF37A1IGU5 675 aa8.75□□□□□ -1.01
HDAC6-216ENST00000468949 CASTOR2A6NHX0 329 aa8.75□□□□□ -1.01
HDAC6-216ENST00000468949 MEIS3P2A8K0S8 358 aa8.75□□□□□ -1.01
HDAC6-216ENST00000468949 GRXCR1A8MXD5 290 aa8.75□□□□□ -1.01
HDAC6-216ENST00000468949 TLL1O43897 1013 aa8.75□□□□□ -1.01
HDAC6-216ENST00000468949 OFD1O75665 1012 aa8.75□□□□□ -1.01
HDAC6-216ENST00000468949 C7P10643 843 aa8.75□□□□□ -1.01
HDAC6-216ENST00000468949 TRIM21P19474 475 aaKnown RBP8.75□□□□□ -1.01
HDAC6-216ENST00000468949 CYP3A5P20815 502 aa8.75□□□□□ -1.01
HDAC6-216ENST00000468949 POLR2BP30876 1174 aaKnown RBP8.75□□□□□ -1.01
HDAC6-216ENST00000468949 PBX2P40425 430 aa8.75□□□□□ -1.01
HDAC6-216ENST00000468949 PNPLA4P41247 253 aa8.75□□□□□ -1.01
HDAC6-216ENST00000468949 OR1G1P47890 313 aa8.75□□□□□ -1.01
HDAC6-216ENST00000468949 TNNC1P63316 161 aa8.75□□□□□ -1.01
HDAC6-216ENST00000468949 RBP5P82980 135 aa8.75□□□□□ -1.01
HDAC6-216ENST00000468949 TUSC3Q13454 348 aa8.75□□□□□ -1.01
HDAC6-216ENST00000468949 NCOA4Q13772 614 aa8.75□□□□□ -1.01
HDAC6-216ENST00000468949 EXOC3L4Q17RC7 722 aa8.75□□□□□ -1.01
HDAC6-216ENST00000468949 ZNF699Q32M78 642 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms