RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 TOM1L1O75674 476 aa26.77■■□□□ 1.88
PTCH1-210ENST00000468211 STRN3Q13033 797 aa26.77■■□□□ 1.88
PTCH1-210ENST00000468211 NOLC1Q14978 699 aaKnown RBP eCLIP26.77■■□□□ 1.88
PTCH1-210ENST00000468211 CDK5RAP3Q96JB5 506 aa26.77■■□□□ 1.88
PTCH1-210ENST00000468211 RTP3Q9BQQ7 232 aa26.77■■□□□ 1.88
PTCH1-210ENST00000468211 SMC3Q9UQE7 1217 aa26.77■■□□□ 1.88
PTCH1-210ENST00000468211 ZFP37Q9Y6Q3 630 aaPredicted RBP26.77■■□□□ 1.88
PTCH1-210ENST00000468211 TBC1D4O60343 1298 aa26.76■■□□□ 1.87
PTCH1-210ENST00000468211 POU2F2P09086 479 aa26.76■■□□□ 1.87
PTCH1-210ENST00000468211 SMTNP53814 917 aa26.76■■□□□ 1.87
PTCH1-210ENST00000468211 ROR1Q01973 937 aa26.76■■□□□ 1.87
PTCH1-210ENST00000468211 GRIN1Q05586 938 aa26.76■■□□□ 1.87
PTCH1-210ENST00000468211 SLC8B1Q6J4K2 584 aa26.76■■□□□ 1.87
PTCH1-210ENST00000468211 ZPBP2Q6X784 338 aa26.76■■□□□ 1.87
PTCH1-210ENST00000468211 KCTD17Q8N5Z5 321 aa26.76■■□□□ 1.87
PTCH1-210ENST00000468211 DTWD2Q8NBA8 298 aa26.76■■□□□ 1.87
PTCH1-210ENST00000468211 TBC1D17Q9HA65 648 aa26.76■■□□□ 1.87
PTCH1-210ENST00000468211 TUBGCP4Q9UGJ1 667 aa26.76■■□□□ 1.87
PTCH1-210ENST00000468211 WDR27A2RRH5 827 aa26.75■■□□□ 1.87
PTCH1-210ENST00000468211 STK25O00506 426 aa26.75■■□□□ 1.87
PTCH1-210ENST00000468211 NBL1P41271 181 aa26.75■■□□□ 1.87
PTCH1-210ENST00000468211 SPAG1Q07617 926 aa26.75■■□□□ 1.87
PTCH1-210ENST00000468211 MCL1Q07820 350 aa26.75■■□□□ 1.87
PTCH1-210ENST00000468211 LARP1BQ659C4 914 aaKnown RBP26.75■■□□□ 1.87
PTCH1-210ENST00000468211 POTEHQ6S545 545 aa26.75■■□□□ 1.87
PTCH1-210ENST00000468211 ASCL5Q7RTU5 278 aa26.75■■□□□ 1.87
PTCH1-210ENST00000468211 SLC2A4RGQ9NR83 387 aa26.75■■□□□ 1.87
PTCH1-210ENST00000468211 KCND2Q9NZV8 630 aa26.75■■□□□ 1.87
PTCH1-210ENST00000468211 ABLIM3O94929 683 aa26.74■■□□□ 1.87
PTCH1-210ENST00000468211 RPL9P32969 192 aaKnown RBP26.74■■□□□ 1.87
PTCH1-210ENST00000468211 NCKAP1LP55160 1127 aa26.74■■□□□ 1.87
PTCH1-210ENST00000468211 ARPP19P56211 112 aa26.74■■□□□ 1.87
PTCH1-210ENST00000468211 GPC5P78333 572 aa26.74■■□□□ 1.87
PTCH1-210ENST00000468211 MRPL58Q14197 206 aaKnown RBP26.74■■□□□ 1.87
PTCH1-210ENST00000468211 PABPC1LQ4VXU2 614 aaKnown RBP26.74■■□□□ 1.87
PTCH1-210ENST00000468211 FRMD5Q7Z6J6 570 aa26.74■■□□□ 1.87
PTCH1-210ENST00000468211 NPAS3Q8IXF0 933 aa26.74■■□□□ 1.87
PTCH1-210ENST00000468211 ZNF461Q8TAF7 563 aa26.74■■□□□ 1.87
PTCH1-210ENST00000468211 ING5Q8WYH8 240 aa26.74■■□□□ 1.87
PTCH1-210ENST00000468211 REEP2Q9BRK0 252 aa26.74■■□□□ 1.87
PTCH1-210ENST00000468211 ARHGEF3Q9NR81 526 aa26.74■■□□□ 1.87
PTCH1-210ENST00000468211 BLOC1S4Q9NUP1 217 aa26.74■■□□□ 1.87
PTCH1-210ENST00000468211 NUB1Q9Y5A7 615 aa26.74■■□□□ 1.87
PTCH1-210ENST00000468211 RIF1Q5UIP0 2472 aaKnown RBP26.73■■□□□ 1.87
PTCH1-210ENST00000468211 ANK1P16157 1881 aa26.73■■□□□ 1.87
PTCH1-210ENST00000468211 SYN3O14994 580 aa26.73■■□□□ 1.87
PTCH1-210ENST00000468211 CLDN3O15551 220 aa26.73■■□□□ 1.87
PTCH1-210ENST00000468211 CXCL8P10145 99 aa26.73■■□□□ 1.87
PTCH1-210ENST00000468211 MCM2P49736 904 aa26.73■■□□□ 1.87
PTCH1-210ENST00000468211 DHX8Q14562 1220 aaKnown RBP26.73■■□□□ 1.87
PTCH1-210ENST00000468211 SLC5A9Q2M3M2 681 aa26.73■■□□□ 1.87
PTCH1-210ENST00000468211 HAUS6Q7Z4H7 955 aa26.73■■□□□ 1.87
PTCH1-210ENST00000468211 GPBP1Q86WP2 473 aa26.73■■□□□ 1.87
PTCH1-210ENST00000468211 SUSD3Q96L08 255 aa26.73■■□□□ 1.87
PTCH1-210ENST00000468211 AK8Q96MA6 479 aa26.73■■□□□ 1.87
PTCH1-210ENST00000468211 TBC1D32Q96NH3 1257 aa26.73■■□□□ 1.87
PTCH1-210ENST00000468211 FBXL5Q9UKA1 691 aa26.73■■□□□ 1.87
PTCH1-210ENST00000468211 MIA3Q5JRA6 1907 aa26.73■■□□□ 1.87
PTCH1-210ENST00000468211 SEC24AO95486 1093 aa26.72■■□□□ 1.87
PTCH1-210ENST00000468211 TNFSF9P41273 254 aa26.72■■□□□ 1.87
PTCH1-210ENST00000468211 ANGPT1Q15389 498 aa26.72■■□□□ 1.87
PTCH1-210ENST00000468211 ZBTB41Q5SVQ8 909 aa26.72■■□□□ 1.87
PTCH1-210ENST00000468211 RTL10Q7L3V2 364 aa26.72■■□□□ 1.87
PTCH1-210ENST00000468211 KXD1Q9BQD3 176 aa26.72■■□□□ 1.87
PTCH1-210ENST00000468211 UPF2Q9HAU5 1272 aaKnown RBP26.72■■□□□ 1.87
PTCH1-210ENST00000468211 LARSQ9P2J5 1176 aaKnown RBP26.72■■□□□ 1.87
PTCH1-210ENST00000468211 KCNG1Q9UIX4 513 aa26.72■■□□□ 1.87
PTCH1-210ENST00000468211 PTPRZ1P23471 2315 aaPredicted RBP26.71■■□□□ 1.87
PTCH1-210ENST00000468211 ARHGEF37A1IGU5 675 aa26.71■■□□□ 1.87
PTCH1-210ENST00000468211 RHOP08100 348 aa26.71■■□□□ 1.87
PTCH1-210ENST00000468211 MATR3P43243 847 aaKnown RBP eCLIP26.71■■□□□ 1.87
PTCH1-210ENST00000468211 KCNH3Q9ULD8 1083 aa26.71■■□□□ 1.87
PTCH1-210ENST00000468211 ODF2LQ9ULJ1 636 aa26.71■■□□□ 1.87
PTCH1-210ENST00000468211 ZSCAN21Q9Y5A6 473 aaPredicted RBP26.71■■□□□ 1.87
PTCH1-210ENST00000468211 TTC26A0AVF1 554 aa26.7■■□□□ 1.86
PTCH1-210ENST00000468211 PRR23AA6NEV1 266 aa26.7■■□□□ 1.86
PTCH1-210ENST00000468211 DCNP07585 359 aaKnown RBP26.7■■□□□ 1.86
PTCH1-210ENST00000468211 PLCG1P19174 1290 aa26.7■■□□□ 1.86
PTCH1-210ENST00000468211 RFX1P22670 979 aa26.7■■□□□ 1.86
PTCH1-210ENST00000468211 MCM4P33991 863 aa26.7■■□□□ 1.86
PTCH1-210ENST00000468211 UBA7P41226 1012 aa26.7■■□□□ 1.86
PTCH1-210ENST00000468211 MCM6Q14566 821 aa26.7■■□□□ 1.86
PTCH1-210ENST00000468211 KARSQ15046 597 aaKnown RBP26.7■■□□□ 1.86
PTCH1-210ENST00000468211 CTXN3Q4LDR2 81 aa26.7■■□□□ 1.86
PTCH1-210ENST00000468211 PHLDB3Q6NSJ2 640 aa26.7■■□□□ 1.86
PTCH1-210ENST00000468211 KCNN1Q92952 543 aa26.7■■□□□ 1.86
PTCH1-210ENST00000468211 BICD1Q96G01 975 aa26.7■■□□□ 1.86
PTCH1-210ENST00000468211 FOXQ1Q9C009 403 aa26.7■■□□□ 1.86
PTCH1-210ENST00000468211 DLGAP2Q9P1A6 1054 aa26.7■■□□□ 1.86
PTCH1-210ENST00000468211 MRPS23Q9Y3D9 190 aaKnown RBP26.7■■□□□ 1.86
PTCH1-210ENST00000468211 FAM186AA6NE01 2351 aa26.7■■□□□ 1.86
PTCH1-210ENST00000468211 H7C4K7 107 aa26.69■■□□□ 1.86
PTCH1-210ENST00000468211 NRG2O14511 850 aaPredicted RBP26.69■■□□□ 1.86
PTCH1-210ENST00000468211 PRRG1O14668 218 aa26.69■■□□□ 1.86
PTCH1-210ENST00000468211 SLC26A4O43511 780 aa26.69■■□□□ 1.86
PTCH1-210ENST00000468211 FAM189A1O60320 539 aa26.69■■□□□ 1.86
PTCH1-210ENST00000468211 CLTAP09496 248 aa26.69■■□□□ 1.86
PTCH1-210ENST00000468211 ATF2P15336 505 aa26.69■■□□□ 1.86
PTCH1-210ENST00000468211 GUCY2FP51841 1108 aa26.69■■□□□ 1.86
PTCH1-210ENST00000468211 SF3A1Q15459 793 aaKnown RBP26.69■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms