RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 STRN3Q13033 797 aa23.05■■□□□ 1.28
COL9A3-207ENST00000467819 SEZ6Q53EL9 994 aa23.05■■□□□ 1.28
COL9A3-207ENST00000467819 RILPL1Q5EBL4 403 aa23.05■■□□□ 1.28
COL9A3-207ENST00000467819 NPAS3Q8IXF0 933 aa23.05■■□□□ 1.28
COL9A3-207ENST00000467819 PNMA5Q96PV4 448 aa23.05■■□□□ 1.28
COL9A3-207ENST00000467819 KXD1Q9BQD3 176 aa23.05■■□□□ 1.28
COL9A3-207ENST00000467819 TIPINQ9BVW5 301 aa23.05■■□□□ 1.28
COL9A3-207ENST00000467819 FOXQ1Q9C009 403 aa23.05■■□□□ 1.28
COL9A3-207ENST00000467819 CNTN3Q9P232 1028 aa23.05■■□□□ 1.28
COL9A3-207ENST00000467819 SIT1Q9Y3P8 196 aa23.05■■□□□ 1.28
COL9A3-207ENST00000467819 NUB1Q9Y5A7 615 aa23.05■■□□□ 1.28
COL9A3-207ENST00000467819 VWA3AA6NCI4 1184 aa23.04■■□□□ 1.28
COL9A3-207ENST00000467819 KCNE1P15382 129 aa23.04■■□□□ 1.28
COL9A3-207ENST00000467819 NOLC1Q14978 699 aaKnown RBP eCLIP23.04■■□□□ 1.28
COL9A3-207ENST00000467819 RABEP1Q15276 862 aa23.04■■□□□ 1.28
COL9A3-207ENST00000467819 MRPS23Q9Y3D9 190 aaKnown RBP23.04■■□□□ 1.28
COL9A3-207ENST00000467819 FANCMQ8IYD8 2048 aa23.04■■□□□ 1.28
COL9A3-207ENST00000467819 WDR27A2RRH5 827 aa23.03■■□□□ 1.28
COL9A3-207ENST00000467819 MEFVO15553 781 aaPredicted RBP23.03■■□□□ 1.28
COL9A3-207ENST00000467819 PLS3P13797 630 aa23.03■■□□□ 1.28
COL9A3-207ENST00000467819 ELF1P32519 619 aa23.03■■□□□ 1.28
COL9A3-207ENST00000467819 CACNB1Q02641 598 aaPredicted RBP23.03■■□□□ 1.28
COL9A3-207ENST00000467819 SNW1Q13573 536 aaKnown RBP23.03■■□□□ 1.28
COL9A3-207ENST00000467819 HYIQ5T013 277 aa23.03■■□□□ 1.28
COL9A3-207ENST00000467819 SLC8B1Q6J4K2 584 aa23.03■■□□□ 1.28
COL9A3-207ENST00000467819 RTL10Q7L3V2 364 aa23.03■■□□□ 1.28
COL9A3-207ENST00000467819 TMEM161BQ8NDZ6 487 aa23.03■■□□□ 1.28
COL9A3-207ENST00000467819 PJA1Q8NG27 643 aa23.03■■□□□ 1.28
COL9A3-207ENST00000467819 SPIRE2Q8WWL2 714 aa23.03■■□□□ 1.28
COL9A3-207ENST00000467819 CDK5RAP3Q96JB5 506 aa23.03■■□□□ 1.28
COL9A3-207ENST00000467819 KCNH3Q9ULD8 1083 aa23.03■■□□□ 1.28
COL9A3-207ENST00000467819 H3BQV1 296 aa23.02■■□□□ 1.28
COL9A3-207ENST00000467819 PRRG1O14668 218 aa23.02■■□□□ 1.28
COL9A3-207ENST00000467819 SYN3O14994 580 aa23.02■■□□□ 1.28
COL9A3-207ENST00000467819 TOM1L1O75674 476 aa23.02■■□□□ 1.28
COL9A3-207ENST00000467819 LRG1P02750 347 aa23.02■■□□□ 1.28
COL9A3-207ENST00000467819 RHOP08100 348 aa23.02■■□□□ 1.28
COL9A3-207ENST00000467819 GJB2P29033 226 aa23.02■■□□□ 1.28
COL9A3-207ENST00000467819 MATR3P43243 847 aaKnown RBP eCLIP23.02■■□□□ 1.28
COL9A3-207ENST00000467819 SMTNP53814 917 aa23.02■■□□□ 1.28
COL9A3-207ENST00000467819 SLC5A9Q2M3M2 681 aa23.02■■□□□ 1.28
COL9A3-207ENST00000467819 ADSSL1Q8N142 457 aa23.02■■□□□ 1.28
COL9A3-207ENST00000467819 SYT2Q8N9I0 419 aaPredicted RBP23.02■■□□□ 1.28
COL9A3-207ENST00000467819 ZNF461Q8TAF7 563 aa23.02■■□□□ 1.28
COL9A3-207ENST00000467819 MCRS1Q96EZ8 462 aa23.02■■□□□ 1.28
COL9A3-207ENST00000467819 SHDQ96IW2 340 aa23.02■■□□□ 1.28
COL9A3-207ENST00000467819 TMX3Q96JJ7 454 aa23.02■■□□□ 1.28
COL9A3-207ENST00000467819 NTPCRQ9BSD7 190 aaKnown RBP23.02■■□□□ 1.28
COL9A3-207ENST00000467819 DLGAP2Q9P1A6 1054 aa23.02■■□□□ 1.28
COL9A3-207ENST00000467819 PATJQ8NI35 1801 aa23.02■■□□□ 1.28
COL9A3-207ENST00000467819 EP300Q09472 2414 aaPredicted RBP23.01■■□□□ 1.27
COL9A3-207ENST00000467819 NPHP3-ACAD11A0A0J9YXS1 232 aa23.01■■□□□ 1.27
COL9A3-207ENST00000467819 LRRN2O75325 713 aa23.01■■□□□ 1.27
COL9A3-207ENST00000467819 PLA2G4BP0C869 781 aa23.01■■□□□ 1.27
COL9A3-207ENST00000467819 MAPTP10636 758 aaKnown RBP23.01■■□□□ 1.27
COL9A3-207ENST00000467819 RPL9P32969 192 aaKnown RBP23.01■■□□□ 1.27
COL9A3-207ENST00000467819 MCM4P33991 863 aa23.01■■□□□ 1.27
COL9A3-207ENST00000467819 SLC12A3P55017 1021 aa23.01■■□□□ 1.27
COL9A3-207ENST00000467819 STARD6P59095 220 aa23.01■■□□□ 1.27
COL9A3-207ENST00000467819 SLC10A6Q3KNW5 377 aa23.01■■□□□ 1.27
COL9A3-207ENST00000467819 CYP4F11Q9HBI6 524 aa23.01■■□□□ 1.27
COL9A3-207ENST00000467819 TUBGCP4Q9UGJ1 667 aa23.01■■□□□ 1.27
COL9A3-207ENST00000467819 FBXL5Q9UKA1 691 aa23.01■■□□□ 1.27
COL9A3-207ENST00000467819 R4GN57 208 aa23.01■■□□□ 1.27
COL9A3-207ENST00000467819 ANK1P16157 1881 aa23■■□□□ 1.27
COL9A3-207ENST00000467819 ARHGEF37A1IGU5 675 aa23■■□□□ 1.27
COL9A3-207ENST00000467819 H7C4K7 107 aa23■■□□□ 1.27
COL9A3-207ENST00000467819 ABLIM3O94929 683 aa23■■□□□ 1.27
COL9A3-207ENST00000467819 CEBPBP17676 345 aa23■■□□□ 1.27
COL9A3-207ENST00000467819 MLF2Q15773 248 aaPredicted RBP23■■□□□ 1.27
COL9A3-207ENST00000467819 CTXN3Q4LDR2 81 aa23■■□□□ 1.27
COL9A3-207ENST00000467819 TMEM130Q8N3G9 435 aa23■■□□□ 1.27
COL9A3-207ENST00000467819 BICD1Q96G01 975 aa23■■□□□ 1.27
COL9A3-207ENST00000467819 CORO1BQ9BR76 489 aa23■■□□□ 1.27
COL9A3-207ENST00000467819 KCNG1Q9UIX4 513 aa23■■□□□ 1.27
COL9A3-207ENST00000467819 ZNF292O60281 2723 aa23■■□□□ 1.27
COL9A3-207ENST00000467819 CLDN3O15551 220 aa22.99■■□□□ 1.27
COL9A3-207ENST00000467819 TBC1D4O60343 1298 aa22.99■■□□□ 1.27
COL9A3-207ENST00000467819 CD2BP2O95400 341 aaKnown RBP22.99■■□□□ 1.27
COL9A3-207ENST00000467819 SEC24AO95486 1093 aa22.99■■□□□ 1.27
COL9A3-207ENST00000467819 CXCL8P10145 99 aa22.99■■□□□ 1.27
COL9A3-207ENST00000467819 GLULP15104 373 aa22.99■■□□□ 1.27
COL9A3-207ENST00000467819 ATF2P15336 505 aa22.99■■□□□ 1.27
COL9A3-207ENST00000467819 PTPN2P17706 415 aa22.99■■□□□ 1.27
COL9A3-207ENST00000467819 SPAG1Q07617 926 aa22.99■■□□□ 1.27
COL9A3-207ENST00000467819 TMEM119Q4V9L6 283 aa22.99■■□□□ 1.27
COL9A3-207ENST00000467819 SLC44A4Q53GD3 710 aa22.99■■□□□ 1.27
COL9A3-207ENST00000467819 ZPBP2Q6X784 338 aa22.99■■□□□ 1.27
COL9A3-207ENST00000467819 KCNG4Q8TDN1 519 aa22.99■■□□□ 1.27
COL9A3-207ENST00000467819 SUSD3Q96L08 255 aa22.99■■□□□ 1.27
COL9A3-207ENST00000467819 TBC1D32Q96NH3 1257 aa22.99■■□□□ 1.27
COL9A3-207ENST00000467819 KANSL1LA0AUZ9 987 aa22.98■■□□□ 1.27
COL9A3-207ENST00000467819 PFKPQ01813 784 aa22.98■■□□□ 1.27
COL9A3-207ENST00000467819 MCL1Q07820 350 aa22.98■■□□□ 1.27
COL9A3-207ENST00000467819 MRPL58Q14197 206 aaKnown RBP22.98■■□□□ 1.27
COL9A3-207ENST00000467819 UBXN2BQ14CS0 331 aa22.98■■□□□ 1.27
COL9A3-207ENST00000467819 ARL6IP4Q66PJ3 421 aaKnown RBP22.98■■□□□ 1.27
COL9A3-207ENST00000467819 ZNF280DQ6N043 979 aa22.98■■□□□ 1.27
COL9A3-207ENST00000467819 C1orf210Q8IVY1 113 aa22.98■■□□□ 1.27
COL9A3-207ENST00000467819 KCTD17Q8N5Z5 321 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms