RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 CDH6P55285 790 aa20.02■□□□□ 0.8
CCDC88B-204ENST00000463837 ZNF200P98182 395 aaPredicted RBP20.02■□□□□ 0.8
CCDC88B-204ENST00000463837 TBX2Q13207 712 aaPredicted RBP20.02■□□□□ 0.8
CCDC88B-204ENST00000463837 KYNUQ16719 465 aa20.02■□□□□ 0.8
CCDC88B-204ENST00000463837 Q3C1V9 767 aa20.02■□□□□ 0.8
CCDC88B-204ENST00000463837 ARHGEF26Q96DR7 871 aa20.02■□□□□ 0.8
CCDC88B-204ENST00000463837 C9orf72Q96LT7 481 aa20.02■□□□□ 0.8
CCDC88B-204ENST00000463837 A0A0A6YYK5 440 aaPredicted RBP20.02■□□□□ 0.79
CCDC88B-204ENST00000463837 ITGA8P53708 1063 aa20.02■□□□□ 0.79
CCDC88B-204ENST00000463837 SMAD1Q15797 465 aaKnown RBP20.02■□□□□ 0.79
CCDC88B-204ENST00000463837 MDH1BQ5I0G3 518 aa20.02■□□□□ 0.79
CCDC88B-204ENST00000463837 TTI2Q6NXR4 508 aa20.02■□□□□ 0.79
CCDC88B-204ENST00000463837 RNF139Q8WU17 664 aa20.02■□□□□ 0.79
CCDC88B-204ENST00000463837 ZNF302Q9NR11 478 aa20.02■□□□□ 0.79
CCDC88B-204ENST00000463837 ZBTB12Q9Y330 459 aaPredicted RBP20.02■□□□□ 0.79
CCDC88B-204ENST00000463837 IL10P22301 178 aa20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 ALDH18A1P54886 795 aaKnown RBP20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 TRADDQ15628 312 aa20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 DUOXA2Q1HG44 320 aa20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 ZBTB41Q5SVQ8 909 aa20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 PSPC1Q8WXF1 523 aaKnown RBP20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 PBXIP1Q96AQ6 731 aa20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 NAGPAQ9UK23 515 aa20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 ZNF711Q9Y462 761 aa20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 AFF2P51816 1311 aa20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 MTBPQ96DY7 904 aa20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 FRMD8Q9BZ67 464 aaPredicted RBP20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 OSBPL8Q9BZF1 889 aa20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 EML4Q9HC35 981 aaKnown RBP20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 C16orf89Q6UX73 402 aa20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 TOPORSQ9NS56 1045 aaPredicted RBP20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 ARHGAP26Q9UNA1 814 aa20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 H3BRJ5 948 aa20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 AARSP49588 968 aaKnown RBP eCLIP20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 GABBR1Q9UBS5 961 aa20.01■□□□□ 0.79
CCDC88B-204ENST00000463837 F8W8V4 182 aa20■□□□□ 0.79
CCDC88B-204ENST00000463837 HNRNPCP07910 306 aaKnown RBP eCLIP20■□□□□ 0.79
CCDC88B-204ENST00000463837 MYBP10242 640 aa20■□□□□ 0.79
CCDC88B-204ENST00000463837 RPA1P27694 616 aa20■□□□□ 0.79
CCDC88B-204ENST00000463837 FAM102AQ5T9C2 384 aaPredicted RBP20■□□□□ 0.79
CCDC88B-204ENST00000463837 C4orf33Q8N1A6 199 aa20■□□□□ 0.79
CCDC88B-204ENST00000463837 MAGEB18Q96M61 343 aa20■□□□□ 0.79
CCDC88B-204ENST00000463837 CAPN6Q9Y6Q1 641 aa20■□□□□ 0.79
CCDC88B-204ENST00000463837 SYCE1LA8MT33 242 aa20■□□□□ 0.79
CCDC88B-204ENST00000463837 CACNB3P54284 484 aa20■□□□□ 0.79
CCDC88B-204ENST00000463837 LRRC36Q1X8D7 754 aa20■□□□□ 0.79
CCDC88B-204ENST00000463837 C16orf86Q6ZW13 317 aa20■□□□□ 0.79
CCDC88B-204ENST00000463837 SLC13A5Q86YT5 568 aaPredicted RBP20■□□□□ 0.79
CCDC88B-204ENST00000463837 ZSWIM1Q9BR11 485 aa20■□□□□ 0.79
CCDC88B-204ENST00000463837 KBTBD4Q9NVX7 518 aa20■□□□□ 0.79
CCDC88B-204ENST00000463837 ZNF34Q8IZ26 560 aa20■□□□□ 0.79
CCDC88B-204ENST00000463837 EFNA5P52803 228 aa20■□□□□ 0.79
CCDC88B-204ENST00000463837 SF3B3Q15393 1217 aaKnown RBP20■□□□□ 0.79
CCDC88B-204ENST00000463837 C4orf22Q6V702 233 aa20■□□□□ 0.79
CCDC88B-204ENST00000463837 FSD1LQ9BXM9 530 aa20■□□□□ 0.79
CCDC88B-204ENST00000463837 PCDHA10Q9Y5I2 948 aa20■□□□□ 0.79
CCDC88B-204ENST00000463837 CES2O00748 559 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 GNAT1P11488 350 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 YWHABP31946 246 aaKnown RBP19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 TOB1P50616 345 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 MKRN4PQ13434 485 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 PDIA6Q15084 440 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 IRAK4Q9NWZ3 460 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 GTF3C4Q9UKN8 822 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 PCDHB2Q9Y5E7 798 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 RARGP13631 454 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 SSTR3P32745 418 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 TROAPQ12815 778 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 KPNB1Q14974 876 aaKnown RBP19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 MDM1Q8TC05 714 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 ACAP3Q96P50 834 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 CCDC134Q9H6E4 229 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 RGL1Q9NZL6 768 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 ZFATQ9P243 1243 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 A0A0G2JLW4 131 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 E2F6O75461 281 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 PLEKP08567 350 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 MANSC1Q9H8J5 431 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 WHRNQ9P202 907 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 MAGEA13PA6NCF6 341 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 LVRNQ6Q4G3 990 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 MSL3Q8N5Y2 521 aaKnown RBP19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 STILQ15468 1287 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 EFHC2Q5JST6 749 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 SETD3Q86TU7 594 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 AGR3Q8TD06 166 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 NCLNQ969V3 563 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 TMEM117Q9H0C3 514 aa19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 HERC5Q9UII4 1024 aaKnown RBP19.99■□□□□ 0.79
CCDC88B-204ENST00000463837 SNRPAP09012 282 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 CIITAP33076 1130 aa19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 FOXD4Q12950 439 aaPredicted RBP19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 PTK7Q13308 1070 aa19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 INPP5AQ14642 412 aa19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 SUGP1Q8IWZ8 645 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 BEST2Q8NFU1 509 aa19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 TMEM8AQ9HCN3 771 aa19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 ZC3H7BQ9UGR2 993 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 XPO7Q9UIA9 1087 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-204ENST00000463837 PRDM4Q9UKN5 801 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms