RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 CACNA1HO95180 2353 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 ARHGEF37A1IGU5 675 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 I3L4J1 428 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 PODXLO00592 558 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 MAN2B1O00754 1011 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 KCNE1P15382 129 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 SDHBP21912 280 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 BRCC3P46736 316 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 CSTF1Q05048 431 aaKnown RBP14.55□□□□□ -0.08
HMGB3-204ENST00000448905 ECM1Q16610 540 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 VARS2Q5ST30 1063 aaKnown RBP14.55□□□□□ -0.08
HMGB3-204ENST00000448905 ERICH6BQ5W0A0 696 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 PDZD4Q76G19 769 aaPredicted RBP14.55□□□□□ -0.08
HMGB3-204ENST00000448905 TCEAL8Q8IYN2 117 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 C4orf32Q8N8J7 132 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 IGSF22Q8N9C0 903 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 ING5Q8WYH8 240 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 ELSPBP1Q96BH3 223 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 CORO1BQ9BR76 489 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 NTPCRQ9BSD7 190 aaKnown RBP14.55□□□□□ -0.08
HMGB3-204ENST00000448905 TARS2Q9BW92 718 aaKnown RBP14.55□□□□□ -0.08
HMGB3-204ENST00000448905 CDT1Q9H211 546 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 GOLGA2P5Q9HBQ8 144 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 ZFP14Q9HCL3 533 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 PTPRHQ9HD43 1115 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 KIF3AQ9Y496 699 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 PCDHGA2Q9Y5H1 932 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.55□□□□□ -0.08
HMGB3-204ENST00000448905 DMDP11532 3685 aa14.55□□□□□ -0.08
HMGB3-204ENST00000448905 PTPRZ1P23471 2315 aaPredicted RBP14.54□□□□□ -0.08
HMGB3-204ENST00000448905 SPTLC1O15269 473 aa14.54□□□□□ -0.08
HMGB3-204ENST00000448905 HIP1RO75146 1068 aa14.54□□□□□ -0.08
HMGB3-204ENST00000448905 EDN1P05305 212 aa14.54□□□□□ -0.08
HMGB3-204ENST00000448905 GLULP15104 373 aa14.54□□□□□ -0.08
HMGB3-204ENST00000448905 U2AF2P26368 475 aaKnown RBP eCLIP14.54□□□□□ -0.08
HMGB3-204ENST00000448905 ROR1Q01973 937 aa14.54□□□□□ -0.08
HMGB3-204ENST00000448905 PUM1Q14671 1186 aaKnown RBP eCLIP14.54□□□□□ -0.08
HMGB3-204ENST00000448905 PPP2R5DQ14738 602 aa14.54□□□□□ -0.08
HMGB3-204ENST00000448905 CTXN3Q4LDR2 81 aa14.54□□□□□ -0.08
HMGB3-204ENST00000448905 MPZL3Q6UWV2 235 aa14.54□□□□□ -0.08
HMGB3-204ENST00000448905 CD300LGQ6UXG3 332 aa14.54□□□□□ -0.08
HMGB3-204ENST00000448905 TRMT61BQ9BVS5 477 aaKnown RBP14.54□□□□□ -0.08
HMGB3-204ENST00000448905 OXCT2Q9BYC2 517 aaPredicted RBP14.54□□□□□ -0.08
HMGB3-204ENST00000448905 LTB4R2Q9NPC1 389 aa14.54□□□□□ -0.08
HMGB3-204ENST00000448905 E9PMD0 336 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 H0YCG3 227 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 CLDN3O15551 220 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 LRRN2O75325 713 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 TOM1L1O75674 476 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 CD72P21854 359 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 PRPHP41219 470 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 RPS9P46781 194 aaKnown RBP14.53□□□□□ -0.08
HMGB3-204ENST00000448905 ADCY1Q08828 1119 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 MRPL58Q14197 206 aaKnown RBP14.53□□□□□ -0.08
HMGB3-204ENST00000448905 RINT1Q6NUQ1 792 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 TPRG1Q6ZUI0 275 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 DGLUCYQ7Z3D6 616 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 LEMD2Q8NC56 503 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 DNASE1L2Q92874 299 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 IRF7Q92985 503 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 CLDN23Q96B33 292 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 FAM126AQ9BYI3 521 aaPredicted RBP14.53□□□□□ -0.08
HMGB3-204ENST00000448905 GPR88Q9GZN0 384 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 BRD9Q9H8M2 597 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 ZSCAN32Q9NX65 697 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 CNTN3Q9P232 1028 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 ARHGAP28Q9P2N2 729 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 NCDNQ9UBB6 729 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 FBXL5Q9UKA1 691 aa14.53□□□□□ -0.08
HMGB3-204ENST00000448905 MTF2Q9Y483 593 aaPredicted RBP14.53□□□□□ -0.08
HMGB3-204ENST00000448905 SFI1A8K8P3 1242 aa14.52□□□□□ -0.09
HMGB3-204ENST00000448905 SLC16A4O15374 487 aa14.52□□□□□ -0.09
HMGB3-204ENST00000448905 IGFBP6P24592 240 aaPredicted RBP14.52□□□□□ -0.09
HMGB3-204ENST00000448905 GUCY2CP25092 1073 aa14.52□□□□□ -0.09
HMGB3-204ENST00000448905 MCM4P33991 863 aa14.52□□□□□ -0.09
HMGB3-204ENST00000448905 MATR3P43243 847 aaKnown RBP eCLIP14.52□□□□□ -0.09
HMGB3-204ENST00000448905 NRLP54845 237 aa14.52□□□□□ -0.09
HMGB3-204ENST00000448905 ZRSR1Q15695 479 aaKnown RBP14.52□□□□□ -0.09
HMGB3-204ENST00000448905 KYAT1Q16773 422 aa14.52□□□□□ -0.09
HMGB3-204ENST00000448905 TANGO2Q6ICL3 276 aa14.52□□□□□ -0.09
HMGB3-204ENST00000448905 ZNF280DQ6N043 979 aa14.52□□□□□ -0.09
HMGB3-204ENST00000448905 C1orf186Q6ZWK4 172 aa14.52□□□□□ -0.09
HMGB3-204ENST00000448905 MAML2Q8IZL2 1156 aaPredicted RBP14.52□□□□□ -0.09
HMGB3-204ENST00000448905 CEP120Q8N960 986 aa14.52□□□□□ -0.09
HMGB3-204ENST00000448905 C3orf58Q8NDZ4 430 aa14.52□□□□□ -0.09
HMGB3-204ENST00000448905 SPIRE2Q8WWL2 714 aa14.52□□□□□ -0.09
HMGB3-204ENST00000448905 E2F7Q96AV8 911 aa14.52□□□□□ -0.09
HMGB3-204ENST00000448905 SUSD3Q96L08 255 aa14.52□□□□□ -0.09
HMGB3-204ENST00000448905 ZMAT2Q96NC0 199 aaKnown RBP14.52□□□□□ -0.09
HMGB3-204ENST00000448905 PLEKHA5Q9HAU0 1116 aa14.52□□□□□ -0.09
HMGB3-204ENST00000448905 AFF4Q9UHB7 1163 aaKnown RBP14.52□□□□□ -0.09
HMGB3-204ENST00000448905 PCDHB6Q9Y5E3 794 aa14.52□□□□□ -0.09
HMGB3-204ENST00000448905 WDR27A2RRH5 827 aa14.51□□□□□ -0.09
HMGB3-204ENST00000448905 TBC1D4O60343 1298 aa14.51□□□□□ -0.09
HMGB3-204ENST00000448905 HARSP12081 509 aaKnown RBP14.51□□□□□ -0.09
HMGB3-204ENST00000448905 PLS3P13797 630 aa14.51□□□□□ -0.09
HMGB3-204ENST00000448905 PROZP22891 400 aa14.51□□□□□ -0.09
HMGB3-204ENST00000448905 SOX4Q06945 474 aaPredicted RBP14.51□□□□□ -0.09
HMGB3-204ENST00000448905 ST3GAL1Q11201 340 aa14.51□□□□□ -0.09
HMGB3-204ENST00000448905 NBR1Q14596 966 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms