RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 CKMT1AP12532 417 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 OXCT1P55809 520 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 HSP90AA4PQ58FG1 418 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 HABP4Q5JVS0 413 aaKnown RBP11.24□□□□□ -0.61
SYNE2-206ENST00000441438 MIS18BP1Q6P0N0 1132 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 SYT10Q6XYQ8 523 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 Q8NFD4 153 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 NYXQ9GZU5 481 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 GORASP2Q9H8Y8 452 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 PCDH18Q9HCL0 1135 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 RPRD1BQ9NQG5 326 aaKnown RBP11.24□□□□□ -0.61
SYNE2-206ENST00000441438 USP40Q9NVE5 1235 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 PTPN22Q9Y2R2 807 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 PLATP00750 562 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 CSNK2BP67870 215 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 NR6A1Q15406 480 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 BEND6Q5SZJ8 279 aaPredicted RBP11.24□□□□□ -0.61
SYNE2-206ENST00000441438 C6orf89Q6UWU4 347 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 C15orf52Q6ZUT6 534 aaKnown RBP11.24□□□□□ -0.61
SYNE2-206ENST00000441438 SMARCC2Q8TAQ2 1214 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 ZFAND2BQ8WV99 257 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 SNX27Q96L92 541 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 PRICKLE1Q96MT3 831 aaPredicted RBP11.24□□□□□ -0.61
SYNE2-206ENST00000441438 PLEKHF1Q96S99 279 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 COQ3Q9NZJ6 369 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 DDX25Q9UHL0 483 aaKnown RBP11.24□□□□□ -0.61
SYNE2-206ENST00000441438 CCDC78A2IDD5 438 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 LRRIQ4A6NIV6 560 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 FMO6PO60774 539 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 S100A9P06702 114 aaKnown RBP11.24□□□□□ -0.61
SYNE2-206ENST00000441438 SNRNP70P08621 437 aaKnown RBP11.24□□□□□ -0.61
SYNE2-206ENST00000441438 SLC12A3P55017 1021 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 VCPP55072 806 aaKnown RBP11.24□□□□□ -0.61
SYNE2-206ENST00000441438 EIF4A1P60842 406 aaKnown RBP11.24□□□□□ -0.61
SYNE2-206ENST00000441438 STIM1Q13586 685 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 TMTC4Q5T4D3 741 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 C8orf74Q6P047 294 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 ANKS4BQ8N8V4 417 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 CABS1Q96KC9 395 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 FAM20AQ96MK3 541 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 AGXT2Q9BYV1 514 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 TRIT1Q9H3H1 467 aaKnown RBP11.24□□□□□ -0.61
SYNE2-206ENST00000441438 EHD2Q9NZN4 543 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 FBXO40Q9UH90 709 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 DPP7Q9UHL4 492 aa11.24□□□□□ -0.61
SYNE2-206ENST00000441438 PAIP2BQ9ULR5 123 aaKnown RBP11.24□□□□□ -0.61
SYNE2-206ENST00000441438 SCN11AQ9UI33 1791 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 PGPEP1LA6NFU8 196 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 PRR5-ARHGAP8B1AHC4 643 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 TPP1O14773 563 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 IDH1O75874 414 aaKnown RBP11.23□□□□□ -0.61
SYNE2-206ENST00000441438 SEC31AO94979 1220 aaKnown RBP11.23□□□□□ -0.61
SYNE2-206ENST00000441438 PLGP00747 810 aaPredicted RBP11.23□□□□□ -0.61
SYNE2-206ENST00000441438 NR1H2P55055 460 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 SSRP1Q08945 709 aaKnown RBP11.23□□□□□ -0.61
SYNE2-206ENST00000441438 NCBP1Q09161 790 aaKnown RBP11.23□□□□□ -0.61
SYNE2-206ENST00000441438 GRSF1Q12849 480 aaKnown RBP eCLIP11.23□□□□□ -0.61
SYNE2-206ENST00000441438 KRT24Q2M2I5 525 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 TCTE1Q5JU00 501 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 NBPF14Q5TI25 921 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 RNF219Q5W0B1 726 aaPredicted RBP11.23□□□□□ -0.61
SYNE2-206ENST00000441438 IL27RAQ6UWB1 636 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 TTLL11Q8NHH1 800 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 CUL5Q93034 780 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 LPIN3Q9BQK8 851 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 ESYT1Q9BSJ8 1104 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 PARD6BQ9BYG5 372 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 MVB12BQ9H7P6 319 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 SH2B1Q9NRF2 756 aaPredicted RBP11.23□□□□□ -0.61
SYNE2-206ENST00000441438 SRP68Q9UHB9 627 aaKnown RBP11.23□□□□□ -0.61
SYNE2-206ENST00000441438 PCDHGB6Q9Y5F9 930 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 NPC1O15118 1278 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 CYTH3O43739 400 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 SPOPO43791 374 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 URI1O94763 535 aaPredicted RBP11.23□□□□□ -0.61
SYNE2-206ENST00000441438 ABCB1P08183 1280 aaPredicted RBP11.23□□□□□ -0.61
SYNE2-206ENST00000441438 ALOX12P18054 663 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 ADCY8P40145 1251 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 CACNB3P54284 484 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 ZNF124Q15973 351 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 CNGA2Q16280 664 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 MDH1BQ5I0G3 518 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 HAUS3Q68CZ6 603 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 FAM71DQ8N9W8 422 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 SLC47A1Q96FL8 570 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 LENG8Q96PV6 779 aaPredicted RBP11.23□□□□□ -0.61
SYNE2-206ENST00000441438 SLC4A9Q96Q91 983 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 INTS2Q9H0H0 1204 aaKnown RBP11.23□□□□□ -0.61
SYNE2-206ENST00000441438 SALL4Q9UJQ4 1053 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 ASB3Q9Y575 518 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 PCDHGA2Q9Y5H1 932 aa11.23□□□□□ -0.61
SYNE2-206ENST00000441438 ACTN4O43707 911 aaKnown RBP11.22□□□□□ -0.61
SYNE2-206ENST00000441438 CYP2E1P05181 493 aaPredicted RBP11.22□□□□□ -0.61
SYNE2-206ENST00000441438 FBXO45P0C2W1 286 aa11.22□□□□□ -0.61
SYNE2-206ENST00000441438 AXLP30530 894 aa11.22□□□□□ -0.61
SYNE2-206ENST00000441438 RNASELQ05823 741 aaKnown RBP11.22□□□□□ -0.61
SYNE2-206ENST00000441438 RFTN1Q14699 578 aaPredicted RBP11.22□□□□□ -0.61
SYNE2-206ENST00000441438 TTC5Q8N0Z6 440 aa11.22□□□□□ -0.61
SYNE2-206ENST00000441438 PRR18Q8N4B5 295 aa11.22□□□□□ -0.61
SYNE2-206ENST00000441438 CRACR2BQ8N4Y2 399 aaPredicted RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms