RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 BIRC3Q13489 604 aa15.37■□□□□ 0.05
SF3B1-204ENST00000414963 NAB2Q15742 525 aa15.37■□□□□ 0.05
SF3B1-204ENST00000414963 SGSM1Q2NKQ1 1148 aa15.37■□□□□ 0.05
SF3B1-204ENST00000414963 KLHDC7AQ5VTJ3 777 aa15.37■□□□□ 0.05
SF3B1-204ENST00000414963 GLB1LQ6UWU2 654 aa15.37■□□□□ 0.05
SF3B1-204ENST00000414963 C16orf59Q7L2K0 433 aa15.37■□□□□ 0.05
SF3B1-204ENST00000414963 DRC7Q8IY82 874 aa15.37■□□□□ 0.05
SF3B1-204ENST00000414963 NEK11Q8NG66 645 aa15.37■□□□□ 0.05
SF3B1-204ENST00000414963 TAF4BQ92750 862 aa15.37■□□□□ 0.05
SF3B1-204ENST00000414963 BADQ92934 168 aa15.37■□□□□ 0.05
SF3B1-204ENST00000414963 FAXDC2Q96IV6 333 aa15.37■□□□□ 0.05
SF3B1-204ENST00000414963 FAM84AQ96KN4 292 aa15.37■□□□□ 0.05
SF3B1-204ENST00000414963 LSM14BQ9BX40 385 aaKnown RBP15.37■□□□□ 0.05
SF3B1-204ENST00000414963 GANQ9H2C0 597 aa15.37■□□□□ 0.05
SF3B1-204ENST00000414963 VRTNQ9H8Y1 702 aa15.37■□□□□ 0.05
SF3B1-204ENST00000414963 MIOSQ9NXC5 875 aa15.37■□□□□ 0.05
SF3B1-204ENST00000414963 KANSL3Q9P2N6 904 aa15.37■□□□□ 0.05
SF3B1-204ENST00000414963 SIX4Q9UIU6 781 aa15.37■□□□□ 0.05
SF3B1-204ENST00000414963 SCN5AQ14524 2016 aa15.37■□□□□ 0.05
SF3B1-204ENST00000414963 ANK1P16157 1881 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 RALGAPA2Q2PPJ7 1873 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 ANO9A1A5B4 782 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 TULP1O00294 542 aaPredicted RBP15.36■□□□□ 0.05
SF3B1-204ENST00000414963 ASS1P00966 412 aaKnown RBP15.36■□□□□ 0.05
SF3B1-204ENST00000414963 GYPCP04921 128 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 THP07101 528 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 ACTN1P12814 892 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 RFX1P22670 979 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 LRPAP1P30533 357 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 ATICP31939 592 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 PIK3CAP42336 1068 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 AFF1P51825 1210 aaKnown RBP15.36■□□□□ 0.05
SF3B1-204ENST00000414963 RBP5P82980 135 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 TRPC3Q13507 836 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 CLLU1OSQ5K130 101 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 PPFIBP1Q86W92 1011 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 RNF169Q8NCN4 708 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 C18orf25Q96B23 403 aaPredicted RBP15.36■□□□□ 0.05
SF3B1-204ENST00000414963 PCMTD1Q96MG8 357 aaPredicted RBP15.36■□□□□ 0.05
SF3B1-204ENST00000414963 RPS6KC1Q96S38 1066 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 NAA15Q9BXJ9 866 aaKnown RBP15.36■□□□□ 0.05
SF3B1-204ENST00000414963 XYLT2Q9H1B5 865 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 FAM207AQ9NSI2 230 aaPredicted RBP15.36■□□□□ 0.05
SF3B1-204ENST00000414963 APEX2Q9UBZ4 518 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 CAPN11Q9UMQ6 739 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 PLAGL2Q9UPG8 496 aa15.36■□□□□ 0.05
SF3B1-204ENST00000414963 PIRO00625 290 aa15.35■□□□□ 0.05
SF3B1-204ENST00000414963 EPHB6O15197 1021 aa15.35■□□□□ 0.05
SF3B1-204ENST00000414963 ITGB3P05106 788 aa15.35■□□□□ 0.05
SF3B1-204ENST00000414963 UCHL3P15374 230 aa15.35■□□□□ 0.05
SF3B1-204ENST00000414963 TRIM21P19474 475 aaKnown RBP15.35■□□□□ 0.05
SF3B1-204ENST00000414963 SCNN1GP51170 649 aa15.35■□□□□ 0.05
SF3B1-204ENST00000414963 GRIK3Q13003 919 aa15.35■□□□□ 0.05
SF3B1-204ENST00000414963 ARID5BQ14865 1188 aa15.35■□□□□ 0.05
SF3B1-204ENST00000414963 NOMO2Q5JPE7 1267 aa15.35■□□□□ 0.05
SF3B1-204ENST00000414963 WDR44Q5JSH3 913 aa15.35■□□□□ 0.05
SF3B1-204ENST00000414963 GLRA4Q5JXX5 417 aa15.35■□□□□ 0.05
SF3B1-204ENST00000414963 C9orf57Q5W0N0 161 aa15.35■□□□□ 0.05
SF3B1-204ENST00000414963 PHLDB3Q6NSJ2 640 aa15.35■□□□□ 0.05
SF3B1-204ENST00000414963 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.35■□□□□ 0.059e-13■■■■■ 69.7
SF3B1-204ENST00000414963 LRRC52Q8N7C0 313 aa15.35■□□□□ 0.05
SF3B1-204ENST00000414963 FAM81BQ96LP2 452 aa15.35■□□□□ 0.05
SF3B1-204ENST00000414963 CEP72Q9P209 647 aa15.35■□□□□ 0.05
SF3B1-204ENST00000414963 TUBGCP4Q9UGJ1 667 aa15.35■□□□□ 0.05
SF3B1-204ENST00000414963 LRFN2Q9ULH4 789 aa15.35■□□□□ 0.05
SF3B1-204ENST00000414963 CITO14578 2027 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 GOLGA6L6A8MZA4 724 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 LRRN2O75325 713 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 FGBP02675 491 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 AMHP03971 560 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 ACRP10323 421 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 FGFR1P11362 822 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 RPL9P32969 192 aaKnown RBP15.34■□□□□ 0.05
SF3B1-204ENST00000414963 GSDMDP57764 484 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 MYL6P60660 151 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 GCNT1Q02742 428 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 SOX4Q06945 474 aaPredicted RBP15.34■□□□□ 0.05
SF3B1-204ENST00000414963 SCARA3Q6AZY7 606 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 PSRC1Q6PGN9 363 aaPredicted RBP15.34■□□□□ 0.05
SF3B1-204ENST00000414963 ENOSF1Q7L5Y1 443 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 SPC24Q8NBT2 197 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 CCDC150Q8NCX0 1101 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 URGCPQ8TCY9 931 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 HELQQ8TDG4 1101 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 DPF3Q92784 378 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 TOP1MTQ969P6 601 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 JAKMIP2Q96AA8 810 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 UROC1Q96N76 676 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 NT5C1BQ96P26 610 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 CASD1Q96PB1 797 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 MYO6Q9UM54 1294 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 AGAP1Q9UPQ3 857 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 TTC3P53804 2025 aa15.34■□□□□ 0.05
SF3B1-204ENST00000414963 RNF225M0QZC1 329 aaPredicted RBP15.33■□□□□ 0.04
SF3B1-204ENST00000414963 TPM1P09493 284 aa15.33■□□□□ 0.04
SF3B1-204ENST00000414963 PAX3P23760 479 aa15.33■□□□□ 0.04
SF3B1-204ENST00000414963 POLR2BP30876 1174 aaKnown RBP15.33■□□□□ 0.04
SF3B1-204ENST00000414963 PNPLA4P41247 253 aa15.33■□□□□ 0.04
SF3B1-204ENST00000414963 FXR1P51114 621 aaKnown RBP eCLIP15.33■□□□□ 0.045e-6■■■□□ 17.7
SF3B1-204ENST00000414963 GUCY2FP51841 1108 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms