RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 MTUS1Q9ULD2 1270 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 RGPD3A6NKT7 1758 aaPredicted RBP15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 MAST2Q6P0Q8 1798 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 RGPD4Q7Z3J3 1758 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 H0YIN7 160 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 TMCC1O94876 653 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 ITGA2BP08514 1039 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 ITIH2P19823 946 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 SOX5P35711 763 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 HADHBP55084 474 aaKnown RBP15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 DEUP1Q05D60 604 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 RBM26Q5T8P6 1007 aaKnown RBP15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 SLC13A5Q86YT5 568 aaPredicted RBP15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 ARL8BQ9NVJ2 186 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 GCNT4Q9P109 453 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 DAGLAQ9Y4D2 1042 aa15.57■□□□□ 0.08
VPS9D1-201ENST00000389386 FRMPD2Q68DX3 1309 aaPredicted RBP15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 NPHP3-ACAD11A0A0J9YXS1 232 aa15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 ANKRD62A6NC57 917 aa15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 A6NJR5 290 aa15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 EDIL3O43854 480 aa15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 OATP04181 439 aa15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 PLEKHG4Q58EX7 1191 aa15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 DCAF17Q5H9S7 520 aaPredicted RBP15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 SH2D4BQ5SQS7 431 aa15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 SEL1L2Q5TEA6 688 aa15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 C11orf63Q6NUN7 778 aa15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 OTOAQ7RTW8 1153 aa15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 CERS5Q8N5B7 392 aa15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 C12orf50Q8NA57 414 aaPredicted RBP15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 LENG1Q96BZ8 264 aaPredicted RBP15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 UBN1Q9NPG3 1134 aa15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 A0A1W2PRG0 241 aa15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 GYG2O15488 501 aa15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 ALDH1B1P30837 517 aa15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 CD151P48509 253 aa15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 CACNB1Q02641 598 aaPredicted RBP15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 SPATA24Q86W54 205 aa15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 RMI1Q9H9A7 625 aa15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 TMEM260Q9NX78 707 aa15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.56■□□□□ 0.08
VPS9D1-201ENST00000389386 TDP2O95551 362 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 VAV1P15498 845 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 IVDP26440 423 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 R3HDM1Q15032 1099 aaKnown RBP15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 Q4G0T1 1027 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 PALB2Q86YC2 1186 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 LRRC47Q8N1G4 583 aaKnown RBP15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 SMC1BQ8NDV3 1235 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 DYDC2Q96IM9 177 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 LRRC19Q9H756 370 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 DDX4Q9NQI0 724 aaKnown RBP15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 KANSL3Q9P2N6 904 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 PCDHAC2Q9Y5I4 1007 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 COL11A2P13942 1736 aaPredicted RBP15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 NAV1Q8NEY1 1877 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 CDK5RAP2Q96SN8 1893 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 PRPF4O43172 522 aaKnown RBP eCLIP15.55■□□□□ 0.084e-7■■■■□ 24.1
VPS9D1-201ENST00000389386 AKAP3O75969 853 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 KRT17Q04695 432 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 TTLL12Q14166 644 aaPredicted RBP15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 MAP7Q14244 749 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 PHLDB3Q6NSJ2 640 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 IZUMO2Q6UXV1 221 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 PRUNE1Q86TP1 453 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 TRABD2AQ86V40 505 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 RHOT2Q8IXI1 618 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 SP8Q8IXZ3 490 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 VPS52Q8N1B4 723 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 ZNF398Q8TD17 642 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 SLCO2A1Q92959 643 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 SLC35C1Q96A29 364 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 ECSITQ9BQ95 431 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 TUBB6Q9BUF5 446 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 TRAF3IP3Q9Y228 551 aa15.55■□□□□ 0.08
VPS9D1-201ENST00000389386 SNED1Q8TER0 1413 aa15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 USP17L5A8MUK1 530 aa15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 RNASEH1O60930 286 aaKnown RBP15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 SLC18A1P54219 525 aa15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 CACNB3P54284 484 aa15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 PABPC4Q13310 644 aaKnown RBP eCLIP15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 THOC5Q13769 683 aaKnown RBP15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 STAT4Q14765 748 aa15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 TMED2Q15363 201 aa15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 TCERG1LQ5VWI1 586 aa15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 DPP8Q6V1X1 898 aaPredicted RBP15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 C15orf52Q6ZUT6 534 aaKnown RBP15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 ST13P4Q8IZP2 240 aaPredicted RBP15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 REXO1Q8N1G1 1221 aaKnown RBP15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 MCUR1Q96AQ8 359 aa15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 NSL1Q96IY1 281 aa15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 PWWP2AQ96N64 755 aa15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 CCDC77Q9BR77 488 aa15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 DNAJC18Q9H819 358 aa15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 ANGPTL2Q9UKU9 493 aa15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 TMEM110-MUSTN1A8MSY1 372 aa15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 CASP5P51878 434 aa15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 ITGA8P53708 1063 aa15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 DSG1Q02413 1049 aa15.54■□□□□ 0.08
VPS9D1-201ENST00000389386 C16orf86Q6ZW13 317 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms