RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 TUBD1Q9UJT1 453 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 PCDHA13Q9Y5I0 950 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 NOX1Q9Y5S8 564 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 ENDOD1O94919 500 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 GCSHP23434 173 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 SLC5A3P53794 718 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 ATP8B2P98198 1209 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 KLF1Q13351 362 aaPredicted RBP3.03□□□□□ -1.92
VPS13A-206ENST00000376646 GEN1Q17RS7 908 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 ABHD17BQ5VST6 288 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 OTUD7BQ6GQQ9 843 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 DDX42Q86XP3 938 aaKnown RBP eCLIP3.03□□□□□ -1.92
VPS13A-206ENST00000376646 CBARPQ8N350 705 aaPredicted RBP3.03□□□□□ -1.92
VPS13A-206ENST00000376646 CCDC8Q9H0W5 538 aaPredicted RBP3.03□□□□□ -1.92
VPS13A-206ENST00000376646 RNPEPQ9H4A4 650 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 ALG13Q9NP73 1137 aaKnown RBP3.03□□□□□ -1.92
VPS13A-206ENST00000376646 PTGFRNQ9P2B2 879 aa3.03□□□□□ -1.92
VPS13A-206ENST00000376646 MTO1Q9Y2Z2 717 aaKnown RBP3.03□□□□□ -1.92
VPS13A-206ENST00000376646 CADPSQ9ULU8 1353 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 MASP2O00187 686 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 FCER1AP12319 257 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 FDXRP22570 491 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 AVPR1BP47901 424 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 SLFN5Q08AF3 891 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 TARDBPQ13148 414 aaKnown RBP eCLIP3.02□□□□□ -1.93
VPS13A-206ENST00000376646 CYP2A13Q16696 494 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 ABCB5Q2M3G0 1257 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 SPDYE7PQ495Y7 208 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 ZNF362Q5T0B9 420 aaPredicted RBP3.02□□□□□ -1.93
VPS13A-206ENST00000376646 STRIP1Q5VSL9 837 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 RNF219Q5W0B1 726 aaPredicted RBP3.02□□□□□ -1.93
VPS13A-206ENST00000376646 EGFLAMQ63HQ2 1017 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 FBXO42Q6P3S6 717 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 PGM2L1Q6PCE3 622 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 FAM180AQ6UWF9 173 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 SEM1Q6ZVN7 128 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 SIMC1Q8NDZ2 872 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 TBC1D15Q8TC07 691 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 JADE3Q92613 823 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 ZNF764Q96H86 408 aaPredicted RBP3.02□□□□□ -1.93
VPS13A-206ENST00000376646 TLR10Q9BXR5 811 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 CASS4Q9NQ75 786 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 ZNF277Q9NRM2 450 aaPredicted RBP3.02□□□□□ -1.93
VPS13A-206ENST00000376646 SPATA31A6Q5VVP1 1343 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 WASHC2AQ641Q2 1341 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 PHLDB1Q86UU1 1377 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 ERN1O75460 977 aaKnown RBP3.02□□□□□ -1.93
VPS13A-206ENST00000376646 ESRRBO95718 433 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 CPEP16870 476 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 ZNF37AP17032 561 aaPredicted RBP3.02□□□□□ -1.93
VPS13A-206ENST00000376646 C5AR1P21730 350 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 TAP1Q03518 808 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 MPP3Q13368 585 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 ACAP2Q15057 778 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 PRR16Q569H4 304 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 RD3Q7Z3Z2 195 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 PRIMA1Q86XR5 153 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 AMOTL1Q8IY63 956 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 NSUN7Q8NE18 718 aaKnown RBP3.02□□□□□ -1.93
VPS13A-206ENST00000376646 CASKIN2Q8WXE0 1202 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 PTCD3Q96EY7 689 aaKnown RBP3.02□□□□□ -1.93
VPS13A-206ENST00000376646 TMX3Q96JJ7 454 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 COQ10AQ96MF6 247 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 C7orf25Q9BPX7 421 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 REXO4Q9GZR2 422 aaKnown RBP3.02□□□□□ -1.93
VPS13A-206ENST00000376646 UNKLQ9H9P5 680 aaKnown RBP3.02□□□□□ -1.93
VPS13A-206ENST00000376646 SLC45A2Q9UMX9 530 aa3.02□□□□□ -1.93
VPS13A-206ENST00000376646 MAST3O60307 1309 aa3.01□□□□□ -1.93
VPS13A-206ENST00000376646 PCDHGA12O60330 932 aa3.01□□□□□ -1.93
VPS13A-206ENST00000376646 NDUFS2O75306 463 aa3.01□□□□□ -1.93
VPS13A-206ENST00000376646 CKBP12277 381 aa3.01□□□□□ -1.93
VPS13A-206ENST00000376646 ZNF280AP59817 542 aaPredicted RBP3.01□□□□□ -1.93
VPS13A-206ENST00000376646 SIM1P81133 766 aaPredicted RBP3.01□□□□□ -1.93
VPS13A-206ENST00000376646 IL10RAQ13651 578 aa3.01□□□□□ -1.93
VPS13A-206ENST00000376646 FAM50AQ14320 339 aaKnown RBP3.01□□□□□ -1.93
VPS13A-206ENST00000376646 C3orf36Q3SXR2 165 aa3.01□□□□□ -1.93
VPS13A-206ENST00000376646 FLYWCH1Q4VC44 716 aa3.01□□□□□ -1.93
VPS13A-206ENST00000376646 LCE1EQ5T753 118 aa3.01□□□□□ -1.93
VPS13A-206ENST00000376646 SP5Q6BEB4 398 aaPredicted RBP3.01□□□□□ -1.93
VPS13A-206ENST00000376646 Q6ZNX1 250 aa3.01□□□□□ -1.93
VPS13A-206ENST00000376646 FBXO41Q8TF61 875 aa3.01□□□□□ -1.93
VPS13A-206ENST00000376646 AIFM2Q9BRQ8 373 aa3.01□□□□□ -1.93
VPS13A-206ENST00000376646 SLC5A4Q9NY91 659 aa3.01□□□□□ -1.93
VPS13A-206ENST00000376646 LIMCH1Q9UPQ0 1083 aa3.01□□□□□ -1.93
VPS13A-206ENST00000376646 PCDHGA9Q9Y5G4 932 aaKnown RBP3.01□□□□□ -1.93
VPS13A-206ENST00000376646 PCDHGA8Q9Y5G5 932 aa3.01□□□□□ -1.93
VPS13A-206ENST00000376646 PCDHGA7Q9Y5G6 932 aa3.01□□□□□ -1.93
VPS13A-206ENST00000376646 PCDHGA6Q9Y5G7 932 aa3.01□□□□□ -1.93
VPS13A-206ENST00000376646 PCDHGA3Q9Y5H0 932 aa3.01□□□□□ -1.93
VPS13A-206ENST00000376646 TNFRSF18Q9Y5U5 241 aa3.01□□□□□ -1.93
VPS13A-206ENST00000376646 COL11A2P13942 1736 aaPredicted RBP3.01□□□□□ -1.93
VPS13A-206ENST00000376646 EVA1CP58658 441 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 MRPS21P82921 87 aaKnown RBP3□□□□□ -1.93
VPS13A-206ENST00000376646 MXRA7P84157 204 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 CCDC142Q17RM4 750 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 INAVAQ3KP66 663 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 FOXR2Q6PJQ5 311 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 FITM2Q8N6M3 262 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 C1orf162Q8NEQ5 155 aaPredicted RBP3□□□□□ -1.93
VPS13A-206ENST00000376646 KAT5Q92993 513 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms