RNA–Protein interactions for RNA: ENST00000374198.4

PRPF4-201, Transcript of pre-mRNA processing factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PRPF4, Length 2,787 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4-201ENST00000374198 MAD2L2Q9UI95 211 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 SUGT1Q9Y2Z0 365 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.7□□□□□ -0.22
PRPF4-201ENST00000374198 ARAP2Q8WZ64 1704 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 ZMYM2Q9UBW7 1377 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 ANKRD62A6NC57 917 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 TSPY2A6NKD2 308 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 F8W8V4 182 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 HARSP12081 509 aaKnown RBP13.7□□□□□ -0.22
PRPF4-201ENST00000374198 SOX5P35711 763 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 PHEXP78562 749 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 NR1H3Q13133 447 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 HNRNPDQ14103 355 aaKnown RBP13.7□□□□□ -0.22
PRPF4-201ENST00000374198 GRM4Q14833 912 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 DCAF17Q5H9S7 520 aaPredicted RBP13.7□□□□□ -0.22
PRPF4-201ENST00000374198 RHOT2Q8IXI1 618 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 CCDC65Q8IXS2 484 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 PNMA1Q8ND90 353 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 SNF8Q96H20 258 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 POLR3CQ9BUI4 534 aaPredicted RBP13.7□□□□□ -0.22
PRPF4-201ENST00000374198 RAB34Q9BZG1 259 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 EBF3Q9H4W6 596 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 LRRC19Q9H756 370 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 GCNT4Q9P109 453 aa13.7□□□□□ -0.22
PRPF4-201ENST00000374198 TROVE2P10155 538 aaKnown RBP eCLIP13.69□□□□□ -0.22
PRPF4-201ENST00000374198 PGM1P36871 562 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 CETN2P41208 172 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 RAP1GDS1P52306 607 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 NAPAP54920 295 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 HADHBP55084 474 aaKnown RBP13.69□□□□□ -0.22
PRPF4-201ENST00000374198 GRM2Q14416 872 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 ECM1Q16610 540 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 RFX8Q6ZV50 586 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 PRUNE1Q86TP1 453 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 MAP7D3Q8IWC1 876 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 ARHGAP24Q8N264 748 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 SLCO2A1Q92959 643 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 CCDC97Q96F63 343 aaPredicted RBP13.69□□□□□ -0.22
PRPF4-201ENST00000374198 SYT11Q9BT88 431 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 NDE1Q9NXR1 346 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 TAS2R14Q9NYV8 317 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 DCTN4Q9UJW0 460 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 BARX2Q9UMQ3 279 aaPredicted RBP13.69□□□□□ -0.22
PRPF4-201ENST00000374198 SMCO2A6NFE2 343 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 TMEM110-MUSTN1A8MSY1 372 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 GAS8O95995 478 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 FGFR1P11362 822 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 RPA3P35244 121 aaPredicted RBP13.69□□□□□ -0.22
PRPF4-201ENST00000374198 ITGA8P53708 1063 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 TMED1Q13445 227 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 HERC4Q5GLZ8 1057 aaPredicted RBP13.69□□□□□ -0.22
PRPF4-201ENST00000374198 B3GNT6Q6ZMB0 384 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 KIF6Q6ZMV9 814 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 PHLDB2Q86SQ0 1253 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 SNRNP27Q8WVK2 155 aaKnown RBP13.69□□□□□ -0.22
PRPF4-201ENST00000374198 ZNF75CPQ92670 426 aaPredicted RBP13.69□□□□□ -0.22
PRPF4-201ENST00000374198 MKL1Q969V6 931 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 SMC6Q96SB8 1091 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 TRABDQ9H4I3 376 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 DNAJC18Q9H819 358 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 ANKFY1Q9P2R3 1169 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 HEY2Q9UBP5 337 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 DNAJB4Q9UDY4 337 aa13.69□□□□□ -0.22
PRPF4-201ENST00000374198 SMG5Q9UPR3 1016 aaKnown RBP13.69□□□□□ -0.22
PRPF4-201ENST00000374198 ZNF24P17028 368 aa13.68□□□□□ -0.22
PRPF4-201ENST00000374198 IVDP26440 423 aa13.68□□□□□ -0.22
PRPF4-201ENST00000374198 CYLC2Q14093 348 aaPredicted RBP13.68□□□□□ -0.22
PRPF4-201ENST00000374198 UBE4AQ14139 1066 aa13.68□□□□□ -0.22
PRPF4-201ENST00000374198 NFIXQ14938 502 aa13.68□□□□□ -0.22
PRPF4-201ENST00000374198 SLC1A5Q15758 541 aa13.68□□□□□ -0.22
PRPF4-201ENST00000374198 GPR162Q16538 588 aa13.68□□□□□ -0.22
PRPF4-201ENST00000374198 TCERG1LQ5VWI1 586 aa13.68□□□□□ -0.22
PRPF4-201ENST00000374198 RNF207Q6ZRF8 634 aa13.68□□□□□ -0.22
PRPF4-201ENST00000374198 NLRP10Q86W26 655 aa13.68□□□□□ -0.22
PRPF4-201ENST00000374198 SCUBE1Q8IWY4 988 aa13.68□□□□□ -0.22
PRPF4-201ENST00000374198 C6orf50Q9HD87 102 aa13.68□□□□□ -0.22
PRPF4-201ENST00000374198 TYW1Q9NV66 732 aaKnown RBP13.68□□□□□ -0.22
PRPF4-201ENST00000374198 BAZ2AQ9UIF9 1905 aaKnown RBP13.68□□□□□ -0.22
PRPF4-201ENST00000374198 COL1A1P02452 1464 aaPredicted RBP13.68□□□□□ -0.22
PRPF4-201ENST00000374198 ZNF862O60290 1169 aa13.68□□□□□ -0.22
PRPF4-201ENST00000374198 RARBP10826 455 aa13.68□□□□□ -0.22
PRPF4-201ENST00000374198 ESRRAP11474 423 aaPredicted RBP13.68□□□□□ -0.22
PRPF4-201ENST00000374198 AP2B1P63010 937 aa13.68□□□□□ -0.22
PRPF4-201ENST00000374198 CAV1Q03135 178 aa13.68□□□□□ -0.22
PRPF4-201ENST00000374198 NCCRP1Q6ZVX7 275 aaPredicted RBP13.68□□□□□ -0.22
PRPF4-201ENST00000374198 KSR1Q8IVT5 923 aa13.68□□□□□ -0.22
PRPF4-201ENST00000374198 RFWD2Q8NHY2 731 aa13.68□□□□□ -0.22
PRPF4-201ENST00000374198 PWWP2AQ96N64 755 aa13.68□□□□□ -0.22
PRPF4-201ENST00000374198 VILLO15195 856 aa13.67□□□□□ -0.22
PRPF4-201ENST00000374198 E2F6O75461 281 aa13.67□□□□□ -0.22
PRPF4-201ENST00000374198 CDK4P11802 303 aa13.67□□□□□ -0.22
PRPF4-201ENST00000374198 TNFAIP3P21580 790 aa13.67□□□□□ -0.22
PRPF4-201ENST00000374198 COMTP21964 271 aa13.67□□□□□ -0.22
PRPF4-201ENST00000374198 GNA11P29992 359 aa13.67□□□□□ -0.22
PRPF4-201ENST00000374198 MED21Q13503 144 aa13.67□□□□□ -0.22
PRPF4-201ENST00000374198 BTG3Q14201 252 aaPredicted RBP13.67□□□□□ -0.22
PRPF4-201ENST00000374198 SYT2Q8N9I0 419 aaPredicted RBP13.67□□□□□ -0.22
PRPF4-201ENST00000374198 FAM161BQ96MY7 647 aa13.67□□□□□ -0.22
PRPF4-201ENST00000374198 TTC25Q96NG3 672 aa13.67□□□□□ -0.22
PRPF4-201ENST00000374198 ZDHHC7Q9NXF8 308 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms