RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 TMEM8AQ9HCN3 771 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 KCNH7Q9NS40 1196 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 FBXO28Q9NVF7 368 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 MRPL11Q9Y3B7 192 aaKnown RBP17.43■□□□□ 0.38
SDC4-201ENST00000372733 ANKRD31Q8N7Z5 1873 aa17.43■□□□□ 0.38
SDC4-201ENST00000372733 FAM47DPA6NHR8 397 aa17.42■□□□□ 0.38
SDC4-201ENST00000372733 CHRM1P11229 460 aaPredicted RBP17.42■□□□□ 0.38
SDC4-201ENST00000372733 UGCGQ16739 394 aa17.42■□□□□ 0.38
SDC4-201ENST00000372733 DACT2Q5SW24 774 aa17.42■□□□□ 0.38
SDC4-201ENST00000372733 MCOLN2Q8IZK6 566 aa17.42■□□□□ 0.38
SDC4-201ENST00000372733 FBXL13Q8NEE6 735 aa17.42■□□□□ 0.38
SDC4-201ENST00000372733 MAIP1Q8WWC4 291 aa17.42■□□□□ 0.38
SDC4-201ENST00000372733 CNKSR1Q969H4 720 aa17.42■□□□□ 0.38
SDC4-201ENST00000372733 KIF9Q9HAQ2 790 aa17.42■□□□□ 0.38
SDC4-201ENST00000372733 TARSP26639 723 aaKnown RBP17.42■□□□□ 0.38
SDC4-201ENST00000372733 IL9RQ01113 521 aa17.42■□□□□ 0.38
SDC4-201ENST00000372733 KLF1Q13351 362 aaPredicted RBP17.42■□□□□ 0.38
SDC4-201ENST00000372733 ACVR2BQ13705 512 aa17.42■□□□□ 0.38
SDC4-201ENST00000372733 ANKS1BQ7Z6G8 1248 aa17.42■□□□□ 0.38
SDC4-201ENST00000372733 SLCO1B3Q9NPD5 702 aa17.42■□□□□ 0.38
SDC4-201ENST00000372733 BATF3Q9NR55 127 aa17.42■□□□□ 0.38
SDC4-201ENST00000372733 RAB20Q9NX57 234 aa17.42■□□□□ 0.38
SDC4-201ENST00000372733 COQ4Q9Y3A0 265 aa17.42■□□□□ 0.38
SDC4-201ENST00000372733 LOXHD1Q8IVV2 1947 aa17.42■□□□□ 0.38
SDC4-201ENST00000372733 SKIV2L2P42285 1042 aaKnown RBP17.41■□□□□ 0.38
SDC4-201ENST00000372733 TRAF1Q13077 416 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 STAT4Q14765 748 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 PLA2G4FQ68DD2 849 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 SLC17A8Q8NDX2 589 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 MAML1Q92585 1016 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 RBM15Q96T37 977 aaKnown RBP eCLIP17.41■□□□□ 0.38
SDC4-201ENST00000372733 TXLNGQ9NUQ3 528 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 COL20A1Q9P218 1284 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 NKX1-2Q9UD57 310 aaPredicted RBP17.41■□□□□ 0.38
SDC4-201ENST00000372733 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.41■□□□□ 0.38
SDC4-201ENST00000372733 SCN9AQ15858 1988 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 CCDC189A1A4V9 331 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 DHX15O43143 795 aaKnown RBP17.41■□□□□ 0.38
SDC4-201ENST00000372733 FDX1P10109 184 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 UNGP13051 313 aaPredicted RBP17.41■□□□□ 0.38
SDC4-201ENST00000372733 TAS2R40P59535 323 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 CENPCQ03188 943 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 RNASELQ05823 741 aaKnown RBP17.41■□□□□ 0.38
SDC4-201ENST00000372733 CCDC15Q0P6D6 951 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 HP1BP3Q5SSJ5 553 aaPredicted RBP17.41■□□□□ 0.38
SDC4-201ENST00000372733 FAM102BQ5T8I3 360 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 PODNQ7Z5L7 613 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 LDHDQ86WU2 507 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 VSIG1Q86XK7 387 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 CCDC77Q9BR77 488 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 KLHL11Q9NVR0 708 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 CHKBQ9Y259 395 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 UMODL1Q5DID0 1318 aa17.41■□□□□ 0.38
SDC4-201ENST00000372733 EXOC1LA0A1B0GW35 172 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 EIF4E1BA6NMX2 242 aaKnown RBP17.4■□□□□ 0.38
SDC4-201ENST00000372733 CD58P19256 250 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 YWHABP31946 246 aaKnown RBP17.4■□□□□ 0.38
SDC4-201ENST00000372733 MAGEA4P43358 317 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 POLGP54098 1239 aaPredicted RBP17.4■□□□□ 0.38
SDC4-201ENST00000372733 NCKAP1LP55160 1127 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 P3H1Q32P28 736 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 MIS18BP1Q6P0N0 1132 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 CAPN12Q6ZSI9 719 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 ANKRD35Q8N283 1001 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 GRAMD1AQ96CP6 724 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 FAM167BQ9BTA0 163 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.4■□□□□ 0.38
SDC4-201ENST00000372733 ACTL7BQ9Y614 415 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 THSD7AQ9UPZ6 1657 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 MYPNQ86TC9 1320 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 ASMTLO95671 621 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 GCAP28676 217 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 SSTR3P32745 418 aaPredicted RBP17.4■□□□□ 0.38
SDC4-201ENST00000372733 QARSP47897 775 aaKnown RBP17.4■□□□□ 0.38
SDC4-201ENST00000372733 SV2AQ7L0J3 742 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 TRABD2AQ86V40 505 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 CCDC89Q8N998 374 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 GLIS1Q8NBF1 620 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 SPDL1Q96EA4 605 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 RAB3IPQ96QF0 476 aaPredicted RBP17.4■□□□□ 0.38
SDC4-201ENST00000372733 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.4■□□□□ 0.38
SDC4-201ENST00000372733 SAYSD1Q9NPB0 183 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 AVENQ9NQS1 362 aaPredicted RBP17.4■□□□□ 0.38
SDC4-201ENST00000372733 HAO1Q9UJM8 370 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 GRID1Q9ULK0 1009 aa17.4■□□□□ 0.38
SDC4-201ENST00000372733 FASTKD3Q14CZ7 662 aaKnown RBP17.39■□□□□ 0.37
SDC4-201ENST00000372733 GSTA5Q7RTV2 222 aa17.39■□□□□ 0.37
SDC4-201ENST00000372733 C4orf33Q8N1A6 199 aa17.39■□□□□ 0.37
SDC4-201ENST00000372733 MICAL1Q8TDZ2 1067 aa17.39■□□□□ 0.37
SDC4-201ENST00000372733 ADAM33Q9BZ11 813 aa17.39■□□□□ 0.37
SDC4-201ENST00000372733 OSBPL8Q9BZF1 889 aa17.39■□□□□ 0.37
SDC4-201ENST00000372733 LRMDAQ9H2I8 198 aa17.39■□□□□ 0.37
SDC4-201ENST00000372733 ST6GALNAC4Q9H4F1 302 aa17.39■□□□□ 0.37
SDC4-201ENST00000372733 TBX20Q9UMR3 447 aa17.39■□□□□ 0.37
SDC4-201ENST00000372733 PHTF1Q9UMS5 762 aa17.39■□□□□ 0.37
SDC4-201ENST00000372733 USTQ9Y2C2 406 aa17.39■□□□□ 0.37
SDC4-201ENST00000372733 TMX2Q9Y320 296 aa17.39■□□□□ 0.37
SDC4-201ENST00000372733 ASTN2O75129 1339 aaPredicted RBP17.39■□□□□ 0.37
SDC4-201ENST00000372733 POC1B-GALNT4F8VUJ3 575 aa17.39■□□□□ 0.37
SDC4-201ENST00000372733 NPM3O75607 178 aaKnown RBP17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms