RNA–Protein interactions for RNA: ENST00000360413.7

SRGAP3-201, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best) BASIC

Gene SRGAP3, Length 8,415 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-201ENST00000360413 CDC25AP30304 524 aa13.85□□□□□ -0.19
SRGAP3-201ENST00000360413 NPEPPSP55786 919 aa13.85□□□□□ -0.19
SRGAP3-201ENST00000360413 SCARA5Q6ZMJ2 495 aa13.85□□□□□ -0.19
SRGAP3-201ENST00000360413 HES6Q96HZ4 224 aa13.85□□□□□ -0.19
SRGAP3-201ENST00000360413 NARS2Q96I59 477 aaKnown RBP13.85□□□□□ -0.19
SRGAP3-201ENST00000360413 DEPDC7Q96QD5 511 aa13.85□□□□□ -0.19
SRGAP3-201ENST00000360413 VCPKMTQ9H867 229 aa13.85□□□□□ -0.19
SRGAP3-201ENST00000360413 LSM7Q9UK45 103 aaKnown RBP13.85□□□□□ -0.19
SRGAP3-201ENST00000360413 ASNSP08243 561 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 SYTL3Q4VX76 610 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 ZNF467Q7Z7K2 595 aaPredicted RBP13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 CDKL3Q8IVW4 592 aaPredicted RBP13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 TRIM39Q9HCM9 518 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 NGRNQ9NPE2 291 aaKnown RBP13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 ATAD3AQ9NVI7 634 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 ADAM22Q9P0K1 906 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 MAD2L2Q9UI95 211 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 Q3C1V9 767 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 ZNF564Q8TBZ8 553 aaPredicted RBP13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 DIS3LQ8TF46 1054 aaKnown RBP13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 KRT35Q92764 455 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 MS4A14Q96JA4 679 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 CLEC4MQ9H2X3 399 aaPredicted RBP13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 KLHL20Q9Y2M5 609 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 CFAP99D6REC4 459 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 KPNA4O00629 521 aaPredicted RBP13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 SNPHO15079 494 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 SYNCRIPO60506 623 aaKnown RBP13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 KLHL18O94889 574 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 AP3B2Q13367 1082 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 FAM162AQ96A26 154 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 SPRTNQ9H040 489 aaPredicted RBP13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 PDZK1P1A8MUH7 402 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 RGS4P49798 205 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 SNAP25P60880 206 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 C19orf18Q8NEA5 215 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 RIN2Q8WYP3 895 aaPredicted RBP13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 MAP4K1Q92918 833 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 HSPBP1Q9NZL4 362 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 BTBD7Q9P203 1132 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 CIAO1O76071 339 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 RGS2P41220 211 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 P3H2Q8IVL5 708 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 DTNAQ9Y4J8 743 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 IPPQ9Y573 584 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 KDM5DQ9BY66 1539 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 FDX1P10109 184 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 NQO1P15559 274 aaKnown RBP13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 PLIN5Q00G26 463 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 ROR1Q01973 937 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 SMAD1Q15797 465 aaKnown RBP13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 CCDC80Q76M96 950 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 TCHHQ07283 1943 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 RHPN2Q8IUC4 686 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 PASD1Q8IV76 773 aa13.84□□□□□ -0.19
SRGAP3-201ENST00000360413 BTDP43251 543 aa13.83□□□□□ -0.19
SRGAP3-201ENST00000360413 ZNF235Q14590 738 aa13.83□□□□□ -0.19
SRGAP3-201ENST00000360413 SYDE1Q6ZW31 735 aaPredicted RBP13.83□□□□□ -0.19
SRGAP3-201ENST00000360413 KIF28PB7ZC32 967 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 MTRF1O75570 445 aaKnown RBP13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 TWF2Q6IBS0 349 aaKnown RBP13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 OOSP2Q86WS3 158 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 TTC30BQ8N4P2 665 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 OSBPL8Q9BZF1 889 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 POLD4Q9HCU8 107 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 PLA2G4BP0C869 781 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 SFNP31947 248 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 ARSEP51690 589 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 CATSPER4Q7RTX7 472 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 L3MBTL3Q96JM7 780 aaPredicted RBP13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 IP6K2Q9UHH9 426 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 APPL1Q9UKG1 709 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 CDYLQ9Y232 598 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 SCTRP47872 440 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 ARPP19P56211 112 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 SNX17Q15036 470 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 ZNF560Q96MR9 790 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 QKIQ96PU8 341 aaKnown RBP eCLIP13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 NDFIP2Q9NV92 336 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 HOXC10Q9NYD6 342 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 SAC3D1A6NKF1 404 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 SRP72O76094 671 aaKnown RBP13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 BMP10O95393 424 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 HMOX2P30519 316 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 SDC4P31431 198 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 RSBN1Q5VWQ0 802 aaPredicted RBP13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 ARMC6Q6NXE6 501 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 KRT73Q86Y46 540 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 TRPC7Q9HCX4 862 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 MAN1C1Q9NR34 630 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 DNAJC12Q9UKB3 198 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 HPS5Q9UPZ3 1129 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 SFI1A8K8P3 1242 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 OTUD4Q01804 1114 aaKnown RBP13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 SETD3Q86TU7 594 aaPredicted RBP13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 RIN3Q8TB24 985 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 TBCKQ8TEA7 893 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 C1orf54Q8WWF1 131 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 USP21Q9UK80 565 aa13.83□□□□□ -0.2
SRGAP3-201ENST00000360413 PCDHB6Q9Y5E3 794 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms