RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 VARS2Q5ST30 1063 aaKnown RBP15.83■□□□□ 0.12
PRPF40A-201ENST00000354363 SLC8B1Q6J4K2 584 aa15.83■□□□□ 0.12
PRPF40A-201ENST00000354363 MTSS1LQ765P7 747 aa15.83■□□□□ 0.12
PRPF40A-201ENST00000354363 SPIRE2Q8WWL2 714 aa15.83■□□□□ 0.12
PRPF40A-201ENST00000354363 KCNH3Q9ULD8 1083 aa15.83■□□□□ 0.12
PRPF40A-201ENST00000354363 PATJQ8NI35 1801 aa15.82■□□□□ 0.12
PRPF40A-201ENST00000354363 DCNP07585 359 aaKnown RBP15.82■□□□□ 0.12
PRPF40A-201ENST00000354363 NPAS3Q8IXF0 933 aa15.82■□□□□ 0.12
PRPF40A-201ENST00000354363 SYT2Q8N9I0 419 aaPredicted RBP15.82■□□□□ 0.12
PRPF40A-201ENST00000354363 TMEM161BQ8NDZ6 487 aa15.82■□□□□ 0.12
PRPF40A-201ENST00000354363 C18orf25Q96B23 403 aaPredicted RBP15.82■□□□□ 0.12
PRPF40A-201ENST00000354363 PLIN2Q99541 437 aa15.82■□□□□ 0.12
PRPF40A-201ENST00000354363 DLGAP2Q9P1A6 1054 aa15.82■□□□□ 0.12
PRPF40A-201ENST00000354363 SIT1Q9Y3P8 196 aa15.82■□□□□ 0.12
PRPF40A-201ENST00000354363 ARHGEF37A1IGU5 675 aa15.81■□□□□ 0.12
PRPF40A-201ENST00000354363 WDR27A2RRH5 827 aa15.81■□□□□ 0.12
PRPF40A-201ENST00000354363 SYN3O14994 580 aa15.81■□□□□ 0.12
PRPF40A-201ENST00000354363 TBC1D4O60343 1298 aa15.81■□□□□ 0.12
PRPF40A-201ENST00000354363 TOM1L1O75674 476 aa15.81■□□□□ 0.12
PRPF40A-201ENST00000354363 ABLIM3O94929 683 aa15.81■□□□□ 0.12
PRPF40A-201ENST00000354363 PLS3P13797 630 aa15.81■□□□□ 0.12
PRPF40A-201ENST00000354363 RPL9P32969 192 aaKnown RBP15.81■□□□□ 0.12
PRPF40A-201ENST00000354363 SLC12A3P55017 1021 aa15.81■□□□□ 0.12
PRPF40A-201ENST00000354363 STARD6P59095 220 aa15.81■□□□□ 0.12
PRPF40A-201ENST00000354363 STRN3Q13033 797 aa15.81■□□□□ 0.12
PRPF40A-201ENST00000354363 NOLC1Q14978 699 aaKnown RBP eCLIP15.81■□□□□ 0.12
PRPF40A-201ENST00000354363 SPECC1Q5M775 1068 aa15.81■□□□□ 0.12
PRPF40A-201ENST00000354363 KCTD17Q8N5Z5 321 aa15.81■□□□□ 0.12
PRPF40A-201ENST00000354363 ZNF461Q8TAF7 563 aa15.81■□□□□ 0.12
PRPF40A-201ENST00000354363 ING5Q8WYH8 240 aa15.81■□□□□ 0.12
PRPF40A-201ENST00000354363 KXD1Q9BQD3 176 aa15.81■□□□□ 0.12
PRPF40A-201ENST00000354363 FOXQ1Q9C009 403 aa15.81■□□□□ 0.12
PRPF40A-201ENST00000354363 SPTBN4Q9H254 2564 aa15.8■□□□□ 0.12
PRPF40A-201ENST00000354363 VWA3AA6NCI4 1184 aa15.8■□□□□ 0.12
PRPF40A-201ENST00000354363 RHOP08100 348 aa15.8■□□□□ 0.12
PRPF40A-201ENST00000354363 MAPTP10636 758 aaKnown RBP15.8■□□□□ 0.12
PRPF40A-201ENST00000354363 SMTNP53814 917 aa15.8■□□□□ 0.12
PRPF40A-201ENST00000354363 MRPL58Q14197 206 aaKnown RBP15.8■□□□□ 0.12
PRPF40A-201ENST00000354363 SLC5A9Q2M3M2 681 aa15.8■□□□□ 0.12
PRPF40A-201ENST00000354363 SLC10A6Q3KNW5 377 aa15.8■□□□□ 0.12
PRPF40A-201ENST00000354363 SEZ6Q53EL9 994 aa15.8■□□□□ 0.12
PRPF40A-201ENST00000354363 PJA1Q8NG27 643 aa15.8■□□□□ 0.12
PRPF40A-201ENST00000354363 SHDQ96IW2 340 aa15.8■□□□□ 0.12
PRPF40A-201ENST00000354363 TMX3Q96JJ7 454 aa15.8■□□□□ 0.12
PRPF40A-201ENST00000354363 AVENQ9NQS1 362 aaPredicted RBP15.8■□□□□ 0.12
PRPF40A-201ENST00000354363 ANKFY1Q9P2R3 1169 aa15.8■□□□□ 0.12
PRPF40A-201ENST00000354363 KCNG1Q9UIX4 513 aa15.8■□□□□ 0.12
PRPF40A-201ENST00000354363 MRPS23Q9Y3D9 190 aaKnown RBP15.8■□□□□ 0.12
PRPF40A-201ENST00000354363 NUB1Q9Y5A7 615 aa15.8■□□□□ 0.12
PRPF40A-201ENST00000354363 H7C4K7 107 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 LRG1P02750 347 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 PLA2G4BP0C869 781 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 GJB2P29033 226 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 ELF1P32519 619 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 ARPP19P56211 112 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 SNW1Q13573 536 aaKnown RBP15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 TMEM119Q4V9L6 283 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 POTEHQ6S545 545 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 ZPBP2Q6X784 338 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 CDK5RAP3Q96JB5 506 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 SUSD3Q96L08 255 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 FBXL5Q9UKA1 691 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 NPHP3-ACAD11A0A0J9YXS1 232 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 PRRG1O14668 218 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 LRRN2O75325 713 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 CD2BP2O95400 341 aaKnown RBP15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 SEC24AO95486 1093 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 GLULP15104 373 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 ATF2P15336 505 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 PTPN2P17706 415 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 MCL1Q07820 350 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 MLF2Q15773 248 aaPredicted RBP15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 SLC44A4Q53GD3 710 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 ARL6IP4Q66PJ3 421 aaKnown RBP15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 TCEAL8Q8IYN2 117 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 ADSSL1Q8N142 457 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 MCRS1Q96EZ8 462 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 DDX23Q9BUQ8 820 aaKnown RBP15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 HAPLN2Q9GZV7 340 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 KCND2Q9NZV8 630 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 TUBGCP4Q9UGJ1 667 aa15.79■□□□□ 0.12
PRPF40A-201ENST00000354363 KANSL1LA0AUZ9 987 aa15.78■□□□□ 0.12
PRPF40A-201ENST00000354363 H3BQV1 296 aa15.78■□□□□ 0.12
PRPF40A-201ENST00000354363 CLDN3O15551 220 aa15.78■□□□□ 0.12
PRPF40A-201ENST00000354363 ECI2O75521 394 aa15.78■□□□□ 0.12
PRPF40A-201ENST00000354363 CXCL8P10145 99 aa15.78■□□□□ 0.12
PRPF40A-201ENST00000354363 CEBPBP17676 345 aa15.78■□□□□ 0.12
PRPF40A-201ENST00000354363 MCM4P33991 863 aa15.78■□□□□ 0.12
PRPF40A-201ENST00000354363 NCKAP1LP55160 1127 aa15.78■□□□□ 0.12
PRPF40A-201ENST00000354363 CACNB1Q02641 598 aaPredicted RBP15.78■□□□□ 0.12
PRPF40A-201ENST00000354363 PRKCQQ04759 706 aa15.78■□□□□ 0.12
PRPF40A-201ENST00000354363 CTXN3Q4LDR2 81 aa15.78■□□□□ 0.12
PRPF40A-201ENST00000354363 ARSHQ5FYA8 562 aa15.78■□□□□ 0.12
PRPF40A-201ENST00000354363 PRSS36Q5K4E3 855 aa15.78■□□□□ 0.12
PRPF40A-201ENST00000354363 C1orf210Q8IVY1 113 aa15.78■□□□□ 0.12
PRPF40A-201ENST00000354363 TMEM130Q8N3G9 435 aa15.78■□□□□ 0.12
PRPF40A-201ENST00000354363 DDX12PQ92771 950 aa15.78■□□□□ 0.12
PRPF40A-201ENST00000354363 TBC1D32Q96NH3 1257 aa15.78■□□□□ 0.12
PRPF40A-201ENST00000354363 CYP4F11Q9HBI6 524 aa15.78■□□□□ 0.12
PRPF40A-201ENST00000354363 GDE1Q9NZC3 331 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms