RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 C1orf54Q8WWF1 131 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 SLC30A1Q9Y6M5 507 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 RPRD2Q5VT52 1461 aaKnown RBP11.93□□□□□ -0.5
PTPN4-201ENST00000263708 C3orf70A6NLC5 250 aaPredicted RBP11.93□□□□□ -0.5
PTPN4-201ENST00000263708 ATP8B1O43520 1251 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 AP3B2Q13367 1082 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 EMBQ6PCB8 327 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 OR6J1Q8NGC5 347 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 PANX2Q96RD6 677 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 MARCOQ9UEW3 520 aaPredicted RBP11.93□□□□□ -0.5
PTPN4-201ENST00000263708 ANKRD65E5RJM6 399 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 NBPF9Q3BBW0 867 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 TRIM65Q6PJ69 517 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 P3H2Q8IVL5 708 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 MTIF3Q9H2K0 278 aaKnown RBP11.93□□□□□ -0.5
PTPN4-201ENST00000263708 TASP1Q9H6P5 420 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 XPO1O14980 1071 aaKnown RBP11.93□□□□□ -0.5
PTPN4-201ENST00000263708 TBC1D12O60347 775 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 COX10Q12887 443 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 STAMBPL1Q96FJ0 436 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 SPATA2Q9UM82 520 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 A0A087X0T9 212 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 FAM47DPA6NHR8 397 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 EVPLLA8MZ36 301 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 CCDC188H7C350 402 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 TOMM20Q15388 145 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 HIST2H2ACQ16777 129 aaPredicted RBP11.93□□□□□ -0.5
PTPN4-201ENST00000263708 RABGAP1LQ5R372 815 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 HIST2H2AA3Q6FI13 130 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 LRRC71Q8N4P6 559 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 PNKPQ96T60 521 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 PCDHA6Q9UN73 950 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 PCDHA8Q9Y5H6 950 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 ZMYM3Q14202 1370 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 MAP3K13O43283 966 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 CDK8P49336 464 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 RTL3Q8N8U3 475 aaKnown RBP11.93□□□□□ -0.5
PTPN4-201ENST00000263708 CALR3Q96L12 384 aaKnown RBP11.93□□□□□ -0.5
PTPN4-201ENST00000263708 STON1Q9Y6Q2 735 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 E9PBE3 544 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 AIM2O14862 343 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 STRNO43815 780 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 PBLDP30039 288 aaPredicted RBP11.93□□□□□ -0.5
PTPN4-201ENST00000263708 FBXW10Q5XX13 1052 aa11.93□□□□□ -0.5
PTPN4-201ENST00000263708 GFM2Q969S9 779 aaKnown RBP11.93□□□□□ -0.5
PTPN4-201ENST00000263708 RBAKQ9NYW8 714 aaPredicted RBP11.93□□□□□ -0.5
PTPN4-201ENST00000263708 MYBL1P10243 752 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 KRT20P35900 424 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 RGS4P49798 205 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 ACTR2P61160 394 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 SSH2Q76I76 1423 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 CALML6Q8TD86 181 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 PIK3R5Q8WYR1 880 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 CARD9Q9H257 536 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 SLC39A10Q9ULF5 831 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 TCP11X1B4DZS4 312 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 C2CD2LO14523 706 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 BIRC5O15392 142 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 H2AFYO75367 372 aaKnown RBP11.92□□□□□ -0.5
PTPN4-201ENST00000263708 DMTNQ08495 405 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 GPR101Q96P66 508 aaPredicted RBP11.92□□□□□ -0.5
PTPN4-201ENST00000263708 MYLK2Q9H1R3 596 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 COPS7BQ9H9Q2 264 aaPredicted RBP11.92□□□□□ -0.5
PTPN4-201ENST00000263708 CEP72Q9P209 647 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 GABBR1Q9UBS5 961 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 FEM1BQ9UK73 627 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 BIVM-ERCC5R4GMW8 1640 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 FUT11Q495W5 492 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 PCYOX1LQ8NBM8 494 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 GMNCA6NCL1 334 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 CAND2O75155 1236 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 PDE8BO95263 885 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 MICU2Q8IYU8 434 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 ZNF560Q96MR9 790 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 NFKBIZQ9BYH8 718 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 LOC102724428A0A0B4J2F2 783 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 FTLP02792 175 aaPredicted RBP11.92□□□□□ -0.5
PTPN4-201ENST00000263708 CLCN6P51797 869 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 SIK1P57059 783 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 PLCL1Q15111 1095 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 CCDC137Q6PK04 289 aaKnown RBP11.92□□□□□ -0.5
PTPN4-201ENST00000263708 BNIPLQ7Z465 357 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 VPS37AQ8NEZ2 397 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 PCDHB7Q9Y5E2 793 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 HEATR4Q86WZ0 1026 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 HDHD2Q9H0R4 259 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 KIF1BO60333 1816 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 UHRF1BP1Q6BDS2 1440 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 PIPSLA2A3N6 862 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 MIF4GDA9UHW6 222 aaKnown RBP11.92□□□□□ -0.5
PTPN4-201ENST00000263708 IZUMO3Q5VZ72 239 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 LCORLQ8N3X6 602 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 WNT8AQ9H1J5 351 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 SKAP2O75563 359 aaPredicted RBP11.92□□□□□ -0.5
PTPN4-201ENST00000263708 NLRP11P59045 1033 aaKnown RBP11.92□□□□□ -0.5
PTPN4-201ENST00000263708 CAPRIN2Q6IMN6 1127 aaKnown RBP11.92□□□□□ -0.5
PTPN4-201ENST00000263708 CNDP1Q96KN2 507 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 N6AMT1Q9Y5N5 214 aa11.92□□□□□ -0.5
PTPN4-201ENST00000263708 PRKAB2O43741 272 aa11.91□□□□□ -0.5
PTPN4-201ENST00000263708 ASNSP08243 561 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms