RNA–Protein interactions for RNA: YFR010W

UBP6, Transcript of Ubiquitin-specific protease, yeast

Gene UBP6, Length 1,500 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP6	YFR010W	YDR391C	Q04170	232 aa		3.56	□□□□□ -1.84
UBP6	YFR010W	YMR253C	Q04835	414 aa		3.56	□□□□□ -1.84
UBP6	YFR010W	NKP2	Q06162	153 aa		3.56	□□□□□ -1.84
UBP6	YFR010W	PEX30	Q06169	523 aa		3.56	□□□□□ -1.84
UBP6	YFR010W	CAP2	P13517	287 aa		3.55	□□□□□ -1.84
UBP6	YFR010W	PHO13	P19881	312 aa		3.55	□□□□□ -1.84
UBP6	YFR010W	ALK2	P32789	676 aa	Predicted RBP	3.55	□□□□□ -1.84
UBP6	YFR010W	TIR2	P33890	251 aa		3.55	□□□□□ -1.84
UBP6	YFR010W	COS8	P38723	381 aa		3.55	□□□□□ -1.84
UBP6	YFR010W	DOG2	P38773	246 aa		3.55	□□□□□ -1.84
UBP6	YFR010W	DOG1	P38774	246 aa		3.55	□□□□□ -1.84
UBP6	YFR010W	TRR2	P38816	342 aa		3.55	□□□□□ -1.84
UBP6	YFR010W	TES1	P41903	349 aa	Known RBP	3.55	□□□□□ -1.84
UBP6	YFR010W	BUD4	P47136	1447 aa		3.55	□□□□□ -1.84
UBP6	YFR010W	AVT4	P50944	713 aa		3.55	□□□□□ -1.84
UBP6	YFR010W	FRE4	P53746	719 aa		3.55	□□□□□ -1.84
UBP6	YFR010W	SUR7	P54003	302 aa		3.55	□□□□□ -1.84
UBP6	YFR010W	YPL113C	Q02961	396 aa		3.55	□□□□□ -1.84
UBP6	YFR010W	SCS7	Q03529	384 aa		3.55	□□□□□ -1.84
UBP6	YFR010W	BET5	Q03630	159 aa		3.55	□□□□□ -1.84
UBP6	YFR010W	HPT1	Q04178	221 aa	Known RBP	3.55	□□□□□ -1.84
UBP6	YFR010W	CNL1	Q06333	122 aa		3.55	□□□□□ -1.84
UBP6	YFR010W	MCT1	Q12283	360 aa		3.55	□□□□□ -1.84
UBP6	YFR010W	GEP5	Q12393	293 aa		3.55	□□□□□ -1.84
UBP6	YFR010W	TSC11	P40061	1430 aa		3.55	□□□□□ -1.84
UBP6	YFR010W	BI2	P03873	423 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	PBI2	P0CT04	75 aa	Known RBP	3.54	□□□□□ -1.84
UBP6	YFR010W	GPA2	P10823	449 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	MDM10	P18409	493 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	SEC14	P24280	304 aa	Known RBP	3.54	□□□□□ -1.84
UBP6	YFR010W	YCR006C	P25350	157 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	YCR007C	P25354	239 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	YCR090C	P25654	182 aa	Known RBP	3.54	□□□□□ -1.84
UBP6	YFR010W	CDC50	P25656	391 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	AEP1	P32493	518 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	PDC2	P32896	925 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	YIL169C	P40442	995 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	SER2	P42941	309 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	HST4	P53688	370 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	TRM12	Q04235	462 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	SPG4	Q04438	115 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	TAF9	Q05027	157 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	FDH1	Q08911	376 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	YAL064W-B	O13512	126 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	YKR104W	P0CE69	306 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	SPS100	P13130	326 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	PEX34	P25584	144 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	AHC2	P25649	128 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	SNC1	P31109	117 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	PHA2	P32452	334 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	3.54	□□□□□ -1.84	not detected
UBP6	YFR010W	PAN3	P36102	679 aa	Predicted RBP	3.54	□□□□□ -1.84
UBP6	YFR010W	SPL2	P38839	148 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	YEA4	P40004	342 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	DFG10	P40526	253 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	YFL015C	P43578	164 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	AIM25	P47140	327 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	SOL1	P50278	321 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	FLC3	P53121	802 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	ATP23	P53722	227 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	YNR048W	P53740	393 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	PET191	Q02772	108 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	YET2	Q04210	160 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	YMR317W	Q04893	1140 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	YLR446W	Q06204	433 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	HRT3	Q12347	344 aa		3.54	□□□□□ -1.84
UBP6	YFR010W	RPL7A	P05737	244 aa	Known RBP	3.53	□□□□□ -1.84
UBP6	YFR010W	SEC4	P07560	215 aa	Known RBP	3.53	□□□□□ -1.84
UBP6	YFR010W	UBI4	P0CG63	381 aa	Known RBP	3.53	□□□□□ -1.84
UBP6	YFR010W	RPL2A	P0CX45	254 aa	Known RBP	3.53	□□□□□ -1.84
UBP6	YFR010W	RPL2B	P0CX46	254 aa	Known RBP	3.53	□□□□□ -1.84
UBP6	YFR010W	ERD2	P18414	219 aa		3.53	□□□□□ -1.84
UBP6	YFR010W	ILV6	P25605	309 aa	Known RBP	3.53	□□□□□ -1.84
UBP6	YFR010W	YMC1	P32331	307 aa		3.53	□□□□□ -1.84
UBP6	YFR010W	ERG24	P32462	438 aa	Known RBP	3.53	□□□□□ -1.84
UBP6	YFR010W	YMC2	P38087	329 aa		3.53	□□□□□ -1.84
UBP6	YFR010W	RPS20	P38701	121 aa	Known RBP	3.53	□□□□□ -1.84
UBP6	YFR010W	AIM2	P39721	246 aa		3.53	□□□□□ -1.84
UBP6	YFR010W	ERV46	P39727	415 aa		3.53	□□□□□ -1.84
UBP6	YFR010W	YNL320W	P42840	284 aa		3.53	□□□□□ -1.84
UBP6	YFR010W	ORC5	P50874	479 aa		3.53	□□□□□ -1.84
UBP6	YFR010W	ARO8	P53090	500 aa	Known RBP	3.53	□□□□□ -1.84
UBP6	YFR010W	ARK1	P53974	638 aa		3.53	□□□□□ -1.84
UBP6	YFR010W	LIP2	Q06005	328 aa		3.53	□□□□□ -1.84
UBP6	YFR010W	RPL7B	Q12213	244 aa	Known RBP	3.53	□□□□□ -1.84
UBP6	YFR010W	YGK3	Q12222	375 aa	Predicted RBP	3.53	□□□□□ -1.84
UBP6	YFR010W	YLR099W-A	Q3E798	87 aa		3.53	□□□□□ -1.84
UBP6	YFR010W	SFC1	P33303	322 aa		3.52	□□□□□ -1.85
UBP6	YFR010W	APS1	P35181	156 aa		3.52	□□□□□ -1.85
UBP6	YFR010W	BAT1	P38891	393 aa	Known RBP	3.52	□□□□□ -1.85
UBP6	YFR010W	AYR1	P40471	297 aa		3.52	□□□□□ -1.85
UBP6	YFR010W	XBP1	P40489	647 aa		3.52	□□□□□ -1.85
UBP6	YFR010W	YAE1	P47118	141 aa	Predicted RBP	3.52	□□□□□ -1.85
UBP6	YFR010W	RPS12	P48589	143 aa	Known RBP	3.52	□□□□□ -1.85
UBP6	YFR010W	COF1	Q03048	143 aa	Known RBP	3.52	□□□□□ -1.85
UBP6	YFR010W	DIC1	Q06143	298 aa		3.52	□□□□□ -1.85
UBP6	YFR010W	ATG39	Q06159	398 aa		3.52	□□□□□ -1.85
UBP6	YFR010W	SHH4	Q06236	168 aa		3.52	□□□□□ -1.85
UBP6	YFR010W	LOA1	Q06508	300 aa		3.52	□□□□□ -1.85
UBP6	YFR010W	SLM3	Q12093	417 aa		3.52	□□□□□ -1.85

Retrieved 100 of 5,963 RNA–protein pairs in 37.7 ms