RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	IGD1	P43598	195 aa		3.86	□□□□□ -1.79
CAF16	YFL028C	YJL118W	P47022	219 aa		3.86	□□□□□ -1.79
CAF16	YFL028C	SDT1	P53078	280 aa		3.86	□□□□□ -1.79
CAF16	YFL028C	USE1	P53146	245 aa		3.86	□□□□□ -1.79
CAF16	YFL028C	RNH201	P53942	307 aa		3.86	□□□□□ -1.79
CAF16	YFL028C	SCS7	Q03529	384 aa		3.86	□□□□□ -1.79
CAF16	YFL028C	ECM11	Q04110	302 aa		3.86	□□□□□ -1.79
CAF16	YFL028C	YLR030W	Q07967	263 aa		3.86	□□□□□ -1.79
CAF16	YFL028C	PRM4	Q12498	284 aa		3.86	□□□□□ -1.79
CAF16	YFL028C	YKL018C-A	Q3E7A7	99 aa		3.86	□□□□□ -1.79
CAF16	YFL028C	YIL046W-A	Q3E7Z4	54 aa		3.86	□□□□□ -1.79
CAF16	YFL028C	SAS5	Q99314	248 aa		3.86	□□□□□ -1.79
CAF16	YFL028C	CYR1	P08678	2026 aa	Known RBP	3.86	□□□□□ -1.79
CAF16	YFL028C	FAS1	P07149	2051 aa	Known RBP	3.86	□□□□□ -1.79
CAF16	YFL028C	DAL82	P21705	255 aa		3.85	□□□□□ -1.79
CAF16	YFL028C	MCH2	P36032	473 aa		3.85	□□□□□ -1.79
CAF16	YFL028C	AYR1	P40471	297 aa		3.85	□□□□□ -1.79
CAF16	YFL028C	YIA6	P40556	373 aa		3.85	□□□□□ -1.79
CAF16	YFL028C	GDS1	P41913	522 aa		3.85	□□□□□ -1.79
CAF16	YFL028C	PRM10	P42946	383 aa		3.85	□□□□□ -1.79
CAF16	YFL028C	FMP32	P43557	207 aa		3.85	□□□□□ -1.79
CAF16	YFL028C	TPC1	P53257	314 aa		3.85	□□□□□ -1.79
CAF16	YFL028C	YPL077C	Q02831	240 aa		3.85	□□□□□ -1.79
CAF16	YFL028C	COX20	Q04935	205 aa		3.85	□□□□□ -1.79
CAF16	YFL028C	DTD1	Q07648	150 aa	Known RBP	3.85	□□□□□ -1.79
CAF16	YFL028C	MMT2	Q08970	484 aa		3.85	□□□□□ -1.79
CAF16	YFL028C	RAS2	P01120	322 aa	Known RBP	3.84	□□□□□ -1.79
CAF16	YFL028C	CCA1	P21269	546 aa		3.84	□□□□□ -1.79
CAF16	YFL028C	MRPL20	P22354	195 aa	Predicted RBP	3.84	□□□□□ -1.79
CAF16	YFL028C	SEC17	P32602	292 aa		3.84	□□□□□ -1.79
CAF16	YFL028C	IES6	P32617	166 aa		3.84	□□□□□ -1.79
CAF16	YFL028C	SUI1	P32911	108 aa	Known RBP	3.84	□□□□□ -1.79
CAF16	YFL028C	TAF14	P35189	244 aa		3.84	□□□□□ -1.79
CAF16	YFL028C	VPS21	P36017	210 aa	Known RBP	3.84	□□□□□ -1.79
CAF16	YFL028C	HPM1	P40481	377 aa		3.84	□□□□□ -1.79
CAF16	YFL028C	AGX1	P43567	385 aa		3.84	□□□□□ -1.79
CAF16	YFL028C	IBA57	P47158	497 aa		3.84	□□□□□ -1.79
CAF16	YFL028C	RAD17	P48581	401 aa		3.84	□□□□□ -1.79
CAF16	YFL028C	BOP2	Q06150	570 aa		3.84	□□□□□ -1.79
CAF16	YFL028C	GMC2	Q06201	188 aa		3.84	□□□□□ -1.79
CAF16	YFL028C	RSA1	Q08932	381 aa		3.84	□□□□□ -1.79
CAF16	YFL028C	YPR202W	Q08993	238 aa		3.84	□□□□□ -1.79
CAF16	YFL028C	BTS1	Q12051	335 aa		3.84	□□□□□ -1.79
CAF16	YFL028C	TFC7	Q12415	435 aa		3.84	□□□□□ -1.79
CAF16	YFL028C	YPR064W	Q12492	139 aa		3.84	□□□□□ -1.79
CAF16	YFL028C	YPR096C	O13587	100 aa		3.83	□□□□□ -1.8
CAF16	YFL028C	TAH1	P25638	111 aa	Predicted RBP	3.83	□□□□□ -1.8
CAF16	YFL028C	YEL045C	P32616	141 aa		3.83	□□□□□ -1.8
CAF16	YFL028C	MRPL17	P36528	281 aa		3.83	□□□□□ -1.8
CAF16	YFL028C	SHE1	P38200	338 aa		3.83	□□□□□ -1.8
CAF16	YFL028C	TRM5	P38793	499 aa		3.83	□□□□□ -1.8
CAF16	YFL028C	YIL086C	P40503	102 aa		3.83	□□□□□ -1.8
CAF16	YFL028C	RPL10	P41805	221 aa	Known RBP	3.83	□□□□□ -1.8
CAF16	YFL028C	HOC1	P47124	396 aa		3.83	□□□□□ -1.8
CAF16	YFL028C	UBC13	P52490	153 aa		3.83	□□□□□ -1.8
CAF16	YFL028C	MRX11	Q03079	207 aa		3.83	□□□□□ -1.8
CAF16	YFL028C	YDR476C	Q03362	224 aa		3.83	□□□□□ -1.8
CAF16	YFL028C	SPC24	Q04477	213 aa		3.83	□□□□□ -1.8
CAF16	YFL028C	PAL1	Q05518	499 aa	Known RBP	3.83	□□□□□ -1.8
CAF16	YFL028C	YLR173W	Q06247	608 aa		3.83	□□□□□ -1.8
CAF16	YFL028C	GET4	Q12125	312 aa		3.83	□□□□□ -1.8
CAF16	YFL028C	SNF8	Q12483	233 aa		3.83	□□□□□ -1.8
CAF16	YFL028C	BCY1	P07278	416 aa	Known RBP	3.82	□□□□□ -1.8
CAF16	YFL028C	BGL2	P15703	313 aa	Known RBP	3.82	□□□□□ -1.8
CAF16	YFL028C	ZIP1	P31111	875 aa		3.82	□□□□□ -1.8
CAF16	YFL028C	CAT2	P32796	670 aa	Known RBP	3.82	□□□□□ -1.8
CAF16	YFL028C	MRPL15	P36523	253 aa		3.82	□□□□□ -1.8
CAF16	YFL028C	RCK1	P38622	512 aa		3.82	□□□□□ -1.8
CAF16	YFL028C	HIT1	P46973	164 aa		3.82	□□□□□ -1.8
CAF16	YFL028C	TRM9	P49957	279 aa		3.82	□□□□□ -1.8
CAF16	YFL028C	MIG2	P53035	382 aa		3.82	□□□□□ -1.8
CAF16	YFL028C	VHT1	P53241	593 aa		3.82	□□□□□ -1.8
CAF16	YFL028C	CPD1	P53314	239 aa		3.82	□□□□□ -1.8
CAF16	YFL028C	TIM11	P81449	96 aa	Predicted RBP	3.82	□□□□□ -1.8
CAF16	YFL028C	DYN3	Q04949	312 aa		3.82	□□□□□ -1.8
CAF16	YFL028C	GGA1	Q06336	557 aa		3.82	□□□□□ -1.8
CAF16	YFL028C	CTS2	Q06350	511 aa		3.82	□□□□□ -1.8
CAF16	YFL028C	YOL131W	Q08270	108 aa		3.82	□□□□□ -1.8
CAF16	YFL028C	YPL225W	Q08971	146 aa	Known RBP	3.82	□□□□□ -1.8
CAF16	YFL028C	NSL1	Q12143	216 aa		3.82	□□□□□ -1.8
CAF16	YFL028C	SSO1	P32867	290 aa		3.81	□□□□□ -1.8
CAF16	YFL028C	RPS27A	P35997	82 aa	Known RBP	3.81	□□□□□ -1.8
CAF16	YFL028C	RPS27B	P38711	82 aa		3.81	□□□□□ -1.8
CAF16	YFL028C	RGI1	P40043	161 aa	Predicted RBP	3.81	□□□□□ -1.8
CAF16	YFL028C	YIL001W	P40560	513 aa		3.81	□□□□□ -1.8
CAF16	YFL028C	JHD2	P47156	728 aa	Predicted RBP	3.81	□□□□□ -1.8
CAF16	YFL028C	GMC1	Q04399	608 aa		3.81	□□□□□ -1.8
CAF16	YFL028C	TAZ1	Q06510	381 aa		3.81	□□□□□ -1.8
CAF16	YFL028C	MIM1	Q08176	113 aa		3.81	□□□□□ -1.8
CAF16	YFL028C	TMC1	Q08422	150 aa	Predicted RBP	3.81	□□□□□ -1.8
CAF16	YFL028C	THP2	O13539	261 aa	Known RBP	3.8	□□□□□ -1.8
CAF16	YFL028C	COX2	P00410	251 aa		3.8	□□□□□ -1.8
CAF16	YFL028C	TFS1	P14306	219 aa		3.8	□□□□□ -1.8
CAF16	YFL028C	GPI18	P38211	433 aa		3.8	□□□□□ -1.8
CAF16	YFL028C	BNA6	P43619	295 aa		3.8	□□□□□ -1.8
CAF16	YFL028C	RPL21A	Q02753	160 aa	Known RBP	3.8	□□□□□ -1.8
CAF16	YFL028C	RNH1	Q04740	348 aa		3.8	□□□□□ -1.8
CAF16	YFL028C	YLR446W	Q06204	433 aa		3.8	□□□□□ -1.8
CAF16	YFL028C	GCN1	P33892	2672 aa	Known RBP	3.79	□□□□□ -1.8
CAF16	YFL028C	ATP7	P30902	174 aa		3.79	□□□□□ -1.8

Retrieved 100 of 5,963 RNA–protein pairs in 40.3 ms