RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 VPS54Q9P1Q0 977 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 POTEMA6NI47 508 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 ATP6V1G1O75348 118 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 PYGLP06737 847 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 SNRPAP09012 282 aaKnown RBP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 KIF22Q14807 665 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 POTEHQ6S545 545 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 POTEGQ6S5H5 508 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 METTL16Q86W50 562 aaKnown RBP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 CCDC33Q8N5R6 958 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 MAGEB6Q8N7X4 407 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 SNRNP27Q8WVK2 155 aaKnown RBP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 ARHGEF1Q92888 912 aaKnown RBP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 PHTF1Q9UMS5 762 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 SETBP1Q9Y6X0 1596 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 PDXKO00764 312 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 GYPCP04921 128 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 HPS1Q92902 700 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 DEPDC7Q96QD5 511 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 MAGEB5Q9BZ81 275 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 KCND2Q9NZV8 630 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 ATP6V1HQ9UI12 483 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 PTPN22Q9Y2R2 807 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 C15orf38-AP3S2A0A0A6YYH1 394 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 RAD51CO43502 376 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 TOMM70O94826 608 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 DLGAP3O95886 979 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 FAM47CQ5HY64 1035 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 TTC39BQ5VTQ0 682 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 OTUD7BQ6GQQ9 843 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 TAF2Q6P1X5 1199 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 ARPINQ7Z6K5 226 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 CDH24Q86UP0 819 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 OTULINQ96BN8 352 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 EAF2Q96CJ1 260 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 RAB26Q9ULW5 256 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 PCDHA12Q9UN75 941 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 KCNJ14Q9UNX9 436 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 IQSEC2Q5JU85 1478 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 FAM237AA0A1B0GTK4 181 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 SNAP91O60641 907 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 FGAP02671 866 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 SOX5P35711 763 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 SERPINH1P50454 418 aaKnown RBP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 CCNHP51946 323 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 ASPRV1Q53RT3 343 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 ALDH16A1Q8IZ83 802 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 AP1M1Q9BXS5 423 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 DCTN4Q9UJW0 460 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 SUPT3HO75486 399 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 PCNAP12004 261 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 PDE6AP16499 860 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 TBXAS1P24557 533 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 ITPRIPL1Q6GPH6 555 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 SPOPLQ6IQ16 392 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 STX12Q86Y82 276 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 RCOR2Q8IZ40 523 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 SCYL1Q96KG9 808 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 RBM15Q96T37 977 aaKnown RBP eCLIP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 OSBPL11Q9BXB4 747 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 MUC13Q9H3R2 512 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 CCNB1IP1Q9NPC3 277 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 EMILIN3Q9NT22 766 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 IP6K2Q9UHH9 426 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 AFG3L2Q9Y4W6 797 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 ZBED1O96006 694 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 AP3B2Q13367 1082 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 IZUMO3Q5VZ72 239 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 TBRG4Q969Z0 631 aaKnown RBP eCLIP4.91□□□□□ -1.62
SCN1A-220ENST00000641603 GRID1Q9ULK0 1009 aa4.91□□□□□ -1.62
SCN1A-220ENST00000641603 VDRP11473 427 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 DPYDQ12882 1025 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 GRIK3Q13003 919 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 SFR1Q86XK3 245 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 TMEM126BQ8IUX1 230 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 EFHD2Q96C19 240 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-220ENST00000641603 NACC1Q96RE7 527 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 RBBP8Q99708 897 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 USE1Q9NZ43 259 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 TBK1Q9UHD2 729 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 FRMPD1Q5SYB0 1578 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 SNTNA6NMZ2 147 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 PRR23D1E9PI22 279 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-220ENST00000641603 SMNDC1O75940 238 aaKnown RBP eCLIP4.9□□□□□ -1.62
SCN1A-220ENST00000641603 PRR23D2P0DMB1 279 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-220ENST00000641603 CXCR5P32302 372 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 PTENP60484 403 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 BBS9Q3SYG4 887 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 BNC2Q6ZN30 1099 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-220ENST00000641603 SNX31Q8N9S9 440 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 AGAP11Q8TF27 550 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 CLIC6Q96NY7 704 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 C7orf25Q9BPX7 421 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 ZBED2Q9BTP6 218 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 THTPAQ9BU02 230 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 HESX1Q9UBX0 185 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 ACEP12821 1306 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 PIK3CDO00329 1044 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 SRGAP2O75044 1071 aa4.9□□□□□ -1.62
SCN1A-220ENST00000641603 RHOBTB1O94844 696 aa4.9□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms