RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 DCLRE1AQ6PJP8 1040 aa15.26■□□□□ 0.03
LINC00339-211ENST00000641009 MPZL3Q6UWV2 235 aa15.26■□□□□ 0.03
LINC00339-211ENST00000641009 ALKAL1Q6UXT8 129 aa15.26■□□□□ 0.03
LINC00339-211ENST00000641009 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.26■□□□□ 0.03
LINC00339-211ENST00000641009 GET4Q7L5D6 327 aaPredicted RBP15.26■□□□□ 0.03
LINC00339-211ENST00000641009 ZMAT2Q96NC0 199 aaKnown RBP15.26■□□□□ 0.03
LINC00339-211ENST00000641009 NTPCRQ9BSD7 190 aaKnown RBP15.26■□□□□ 0.03
LINC00339-211ENST00000641009 TCHPQ9BT92 498 aa15.26■□□□□ 0.03
LINC00339-211ENST00000641009 TOPORSQ9NS56 1045 aaPredicted RBP15.26■□□□□ 0.03
LINC00339-211ENST00000641009 DAXXQ9UER7 740 aaPredicted RBP15.26■□□□□ 0.03
LINC00339-211ENST00000641009 DUSP12Q9UNI6 340 aa15.26■□□□□ 0.03
LINC00339-211ENST00000641009 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.26■□□□□ 0.03
LINC00339-211ENST00000641009 NARSO43776 548 aaKnown RBP15.25■□□□□ 0.03
LINC00339-211ENST00000641009 MCF2P10911 925 aa15.25■□□□□ 0.03
LINC00339-211ENST00000641009 PLS3P13797 630 aa15.25■□□□□ 0.03
LINC00339-211ENST00000641009 TKTP29401 623 aaKnown RBP15.25■□□□□ 0.03
LINC00339-211ENST00000641009 BRCC3P46736 316 aa15.25■□□□□ 0.03
LINC00339-211ENST00000641009 TMEM119Q4V9L6 283 aa15.25■□□□□ 0.03
LINC00339-211ENST00000641009 XKR4Q5GH76 650 aa15.25■□□□□ 0.03
LINC00339-211ENST00000641009 RSPO2Q6UXX9 243 aaPredicted RBP15.25■□□□□ 0.03
LINC00339-211ENST00000641009 TMEM105Q8N8V8 129 aa15.25■□□□□ 0.03
LINC00339-211ENST00000641009 TMEM161BQ8NDZ6 487 aa15.25■□□□□ 0.03
LINC00339-211ENST00000641009 SPIRE2Q8WWL2 714 aa15.25■□□□□ 0.03
LINC00339-211ENST00000641009 SNX27Q96L92 541 aa15.25■□□□□ 0.03
LINC00339-211ENST00000641009 UROC1Q96N76 676 aa15.25■□□□□ 0.03
LINC00339-211ENST00000641009 ACAP3Q96P50 834 aa15.25■□□□□ 0.03
LINC00339-211ENST00000641009 MFSD1Q9H3U5 465 aa15.25■□□□□ 0.03
LINC00339-211ENST00000641009 IGSF9Q9P2J2 1179 aa15.25■□□□□ 0.03
LINC00339-211ENST00000641009 ANKFY1Q9P2R3 1169 aa15.25■□□□□ 0.03
LINC00339-211ENST00000641009 EPS15L1Q9UBC2 864 aa15.25■□□□□ 0.03
LINC00339-211ENST00000641009 ZFHX2Q9C0A1 2572 aaPredicted RBP15.25■□□□□ 0.03
LINC00339-211ENST00000641009 MEFVO15553 781 aaPredicted RBP15.24■□□□□ 0.03
LINC00339-211ENST00000641009 C8AP07357 584 aa15.24■□□□□ 0.03
LINC00339-211ENST00000641009 MAPTP10636 758 aaKnown RBP15.24■□□□□ 0.03
LINC00339-211ENST00000641009 OR1D2P34982 312 aa15.24■□□□□ 0.03
LINC00339-211ENST00000641009 STRN3Q13033 797 aa15.24■□□□□ 0.03
LINC00339-211ENST00000641009 SEZ6Q53EL9 994 aa15.24■□□□□ 0.03
LINC00339-211ENST00000641009 ARSHQ5FYA8 562 aa15.24■□□□□ 0.03
LINC00339-211ENST00000641009 LIN9Q5TKA1 542 aa15.24■□□□□ 0.03
LINC00339-211ENST00000641009 PDXDC1Q6P996 788 aa15.24■□□□□ 0.03
LINC00339-211ENST00000641009 GRASPQ7Z6J2 395 aaPredicted RBP15.24■□□□□ 0.03
LINC00339-211ENST00000641009 ST13P5Q8NFI4 369 aaPredicted RBP15.24■□□□□ 0.03
LINC00339-211ENST00000641009 LRRC15Q8TF66 581 aa15.24■□□□□ 0.03
LINC00339-211ENST00000641009 FAM86C1Q9NVL1 165 aa15.24■□□□□ 0.03
LINC00339-211ENST00000641009 MTRRQ9UBK8 725 aa15.24■□□□□ 0.03
LINC00339-211ENST00000641009 CCL16O15467 120 aa15.23■□□□□ 0.03
LINC00339-211ENST00000641009 SMTNP53814 917 aa15.23■□□□□ 0.03
LINC00339-211ENST00000641009 NTHL1P78549 312 aa15.23■□□□□ 0.03
LINC00339-211ENST00000641009 GRIN1Q05586 938 aa15.23■□□□□ 0.03
LINC00339-211ENST00000641009 RAB33AQ14088 237 aa15.23■□□□□ 0.03
LINC00339-211ENST00000641009 DHX8Q14562 1220 aaKnown RBP15.23■□□□□ 0.03
LINC00339-211ENST00000641009 NOLC1Q14978 699 aaKnown RBP eCLIP15.23■□□□□ 0.03
LINC00339-211ENST00000641009 PPM1LQ5SGD2 360 aa15.23■□□□□ 0.03
LINC00339-211ENST00000641009 AXDND1Q5T1B0 1012 aaPredicted RBP15.23■□□□□ 0.03
LINC00339-211ENST00000641009 ASTLQ6HA08 431 aaPredicted RBP15.23■□□□□ 0.03
LINC00339-211ENST00000641009 KCTD17Q8N5Z5 321 aa15.23■□□□□ 0.03
LINC00339-211ENST00000641009 FLCNQ8NFG4 579 aa15.23■□□□□ 0.03
LINC00339-211ENST00000641009 SLC7A14Q8TBB6 771 aa15.23■□□□□ 0.03
LINC00339-211ENST00000641009 C18orf25Q96B23 403 aaPredicted RBP15.23■□□□□ 0.03
LINC00339-211ENST00000641009 DDX27Q96GQ7 796 aaKnown RBP15.23■□□□□ 0.03
LINC00339-211ENST00000641009 SLC38A7Q9NVC3 462 aa15.23■□□□□ 0.03
LINC00339-211ENST00000641009 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.23■□□□□ 0.03
LINC00339-211ENST00000641009 KCND2Q9NZV8 630 aa15.23■□□□□ 0.03
LINC00339-211ENST00000641009 CNTN3Q9P232 1028 aa15.23■□□□□ 0.03
LINC00339-211ENST00000641009 FBXL21Q9UKT6 434 aa15.23■□□□□ 0.03
LINC00339-211ENST00000641009 POLIQ9UNA4 740 aa15.23■□□□□ 0.03
LINC00339-211ENST00000641009 CDY1Q9Y6F8 540 aa15.23■□□□□ 0.03
LINC00339-211ENST00000641009 TCHHQ07283 1943 aa15.22■□□□□ 0.03
LINC00339-211ENST00000641009 MIA3Q5JRA6 1907 aa15.22■□□□□ 0.03
LINC00339-211ENST00000641009 H0Y858 1186 aa15.22■□□□□ 0.03
LINC00339-211ENST00000641009 PODXLO00592 558 aa15.22■□□□□ 0.03
LINC00339-211ENST00000641009 TRAPPC3O43617 180 aa15.22■□□□□ 0.03
LINC00339-211ENST00000641009 TOM1L1O75674 476 aa15.22■□□□□ 0.03
LINC00339-211ENST00000641009 CFHP08603 1231 aa15.22■□□□□ 0.03
LINC00339-211ENST00000641009 LAMP2P13473 410 aa15.22■□□□□ 0.03
LINC00339-211ENST00000641009 KCNE1P15382 129 aa15.22■□□□□ 0.03
LINC00339-211ENST00000641009 FSHRP23945 695 aa15.22■□□□□ 0.03
LINC00339-211ENST00000641009 UBA7P41226 1012 aa15.22■□□□□ 0.03
LINC00339-211ENST00000641009 CWF19L1Q69YN2 538 aaKnown RBP15.22■□□□□ 0.03
LINC00339-211ENST00000641009 SIX5Q8N196 739 aa15.22■□□□□ 0.03
LINC00339-211ENST00000641009 SLC44A3Q8N4M1 653 aa15.22■□□□□ 0.03
LINC00339-211ENST00000641009 CALML4Q96GE6 196 aa15.22■□□□□ 0.03
LINC00339-211ENST00000641009 AK8Q96MA6 479 aa15.22■□□□□ 0.03
LINC00339-211ENST00000641009 REEP2Q9BRK0 252 aa15.22■□□□□ 0.03
LINC00339-211ENST00000641009 HAPLN2Q9GZV7 340 aa15.22■□□□□ 0.03
LINC00339-211ENST00000641009 GALR2O43603 387 aaPredicted RBP15.21■□□□□ 0.03
LINC00339-211ENST00000641009 HNRNPA1P09651 372 aaKnown RBP eCLIP15.21■□□□□ 0.03
LINC00339-211ENST00000641009 NPR3P17342 541 aa15.21■□□□□ 0.03
LINC00339-211ENST00000641009 HOXA9P31269 272 aa15.21■□□□□ 0.03
LINC00339-211ENST00000641009 MATR3P43243 847 aaKnown RBP eCLIP15.21■□□□□ 0.03
LINC00339-211ENST00000641009 NCKAP1LP55160 1127 aa15.21■□□□□ 0.03
LINC00339-211ENST00000641009 SLC10A6Q3KNW5 377 aa15.21■□□□□ 0.03
LINC00339-211ENST00000641009 ZPBP2Q6X784 338 aa15.21■□□□□ 0.03
LINC00339-211ENST00000641009 ANKS3Q6ZW76 656 aa15.21■□□□□ 0.03
LINC00339-211ENST00000641009 BRAPQ7Z569 592 aa15.21■□□□□ 0.03
LINC00339-211ENST00000641009 GPBP1Q86WP2 473 aa15.21■□□□□ 0.03
LINC00339-211ENST00000641009 TMEM130Q8N3G9 435 aa15.21■□□□□ 0.03
LINC00339-211ENST00000641009 LARSQ9P2J5 1176 aaKnown RBP15.21■□□□□ 0.03
LINC00339-211ENST00000641009 KCNG1Q9UIX4 513 aa15.21■□□□□ 0.03
LINC00339-211ENST00000641009 BACE2Q9Y5Z0 518 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms