RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 FBXO46Q6PJ61 603 aaPredicted RBP19.88■□□□□ 0.77
CLN3-254ENST00000637050 TRAPPC11Q7Z392 1133 aa19.88■□□□□ 0.77
CLN3-254ENST00000637050 IRF2BP2Q7Z5L9 587 aa19.88■□□□□ 0.77
CLN3-254ENST00000637050 HELQQ8TDG4 1101 aa19.88■□□□□ 0.77
CLN3-254ENST00000637050 MTMR12Q9C0I1 747 aa19.88■□□□□ 0.77
CLN3-254ENST00000637050 RRAGDQ9NQL2 400 aaPredicted RBP19.88■□□□□ 0.77
CLN3-254ENST00000637050 EPN1Q9Y6I3 576 aaPredicted RBP19.88■□□□□ 0.77
CLN3-254ENST00000637050 NDUFA10O95299 355 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 PLEKP08567 350 aaPredicted RBP19.87■□□□□ 0.77
CLN3-254ENST00000637050 STAT1P42224 750 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 MAPK8IP2Q13387 824 aaPredicted RBP19.87■□□□□ 0.77
CLN3-254ENST00000637050 FBXO47Q5MNV8 452 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 CD302Q8IX05 232 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 PLEKHA5Q9HAU0 1116 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 ST3GAL5Q9UNP4 418 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 PPP2R2CQ9Y2T4 447 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 ADGRG1Q9Y653 693 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 SSU72P8A0A1W2PR75 194 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 TMEM191BP0C7N4 346 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 SOX5P35711 763 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 PRKCIP41743 596 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 TFAMQ00059 246 aaKnown RBP19.87■□□□□ 0.77
CLN3-254ENST00000637050 JADE1Q6IE81 842 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 FMNL3Q8IVF7 1028 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 PPM1KQ8N3J5 372 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 ANKRD36BP1Q96IX9 119 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 ZNF333Q96JL9 665 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 DESI2Q9BSY9 194 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 PI4K2AQ9BTU6 479 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 TRIM6Q9C030 488 aaPredicted RBP19.87■□□□□ 0.77
CLN3-254ENST00000637050 CRISPLD2Q9H0B8 497 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 CHST12Q9NRB3 414 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 SNTG2Q9NY99 539 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 SQORQ9Y6N5 450 aa19.87■□□□□ 0.77
CLN3-254ENST00000637050 GPR182O15218 404 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 CCP110O43303 1012 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 PHACTR2O75167 634 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 TNNC2P02585 160 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 NFICP08651 508 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 FERP16591 822 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 CYLC1P35663 651 aaPredicted RBP19.86■□□□□ 0.77
CLN3-254ENST00000637050 EIF4A3P38919 411 aaKnown RBP19.86■□□□□ 0.77
CLN3-254ENST00000637050 MFAP3P55082 362 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 GCNT1Q02742 428 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 NCOA4Q13772 614 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 ARHGAP44Q17R89 818 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 WDR44Q5JSH3 913 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 ZNF618Q5T7W0 954 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 GPIHBP1Q8IV16 184 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 TATDN2Q93075 761 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 FAM81BQ96LP2 452 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 KREMEN1Q96MU8 473 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 OSBPL7Q9BZF2 842 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 NXF3Q9H4D5 531 aaKnown RBP19.86■□□□□ 0.77
CLN3-254ENST00000637050 AGO3Q9H9G7 860 aaKnown RBP19.86■□□□□ 0.77
CLN3-254ENST00000637050 ERVK-5Q9HDB9 667 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.86■□□□□ 0.77
CLN3-254ENST00000637050 C1orf112Q9NSG2 853 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 TRMT1Q9NXH9 659 aaKnown RBP19.86■□□□□ 0.77
CLN3-254ENST00000637050 C2CD2Q9Y426 696 aa19.86■□□□□ 0.77
CLN3-254ENST00000637050 BZW2Q9Y6E2 419 aaKnown RBP19.86■□□□□ 0.77
CLN3-254ENST00000637050 ZSCAN12O43309 604 aa19.85■□□□□ 0.77
CLN3-254ENST00000637050 CCDC175P0C221 793 aa19.85■□□□□ 0.77
CLN3-254ENST00000637050 CKBP12277 381 aa19.85■□□□□ 0.77
CLN3-254ENST00000637050 ARID5AQ03989 594 aa19.85■□□□□ 0.77
CLN3-254ENST00000637050 KLHL30Q0D2K2 578 aa19.85■□□□□ 0.77
CLN3-254ENST00000637050 NFX1Q12986 1120 aaKnown RBP19.85■□□□□ 0.77
CLN3-254ENST00000637050 ASTE1Q2TB18 679 aaPredicted RBP19.85■□□□□ 0.77
CLN3-254ENST00000637050 ENOSF1Q7L5Y1 443 aa19.85■□□□□ 0.77
CLN3-254ENST00000637050 NT5DC4Q86YG4 428 aa19.85■□□□□ 0.77
CLN3-254ENST00000637050 REXO1L1PQ8IX06 675 aa19.85■□□□□ 0.77
CLN3-254ENST00000637050 KAT5Q92993 513 aa19.85■□□□□ 0.77
CLN3-254ENST00000637050 PPP1R13BQ96KQ4 1090 aa19.85■□□□□ 0.77
CLN3-254ENST00000637050 SNX27Q96L92 541 aa19.85■□□□□ 0.77
CLN3-254ENST00000637050 CCDC42Q96M95 316 aa19.85■□□□□ 0.77
CLN3-254ENST00000637050 HES2Q9Y543 173 aa19.85■□□□□ 0.77
CLN3-254ENST00000637050 RALGAPA2Q2PPJ7 1873 aa19.85■□□□□ 0.77
CLN3-254ENST00000637050 EIF3CLB5ME19 914 aaKnown RBP19.84■□□□□ 0.77
CLN3-254ENST00000637050 FOXN3O00409 490 aaPredicted RBP19.84■□□□□ 0.77
CLN3-254ENST00000637050 CST3P01034 146 aaPredicted RBP19.84■□□□□ 0.77
CLN3-254ENST00000637050 PNMA6AP0CW24 399 aaPredicted RBP19.84■□□□□ 0.77
CLN3-254ENST00000637050 YARSP54577 528 aaKnown RBP19.84■□□□□ 0.77
CLN3-254ENST00000637050 LPIN1Q14693 890 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 TMEM132DQ14C87 1099 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 PKN2Q16513 984 aaKnown RBP19.84■□□□□ 0.77
CLN3-254ENST00000637050 TDRD12Q587J7 1177 aaKnown RBP19.84■□□□□ 0.77
CLN3-254ENST00000637050 SCARA3Q6AZY7 606 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 TWF2Q6IBS0 349 aaKnown RBP19.84■□□□□ 0.77
CLN3-254ENST00000637050 TRAF7Q6Q0C0 670 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 ALKAL1Q6UXT8 129 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 FAM126BQ8IXS8 530 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 USP38Q8NB14 1042 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 SHC3Q92529 594 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 ARMC5Q96C12 935 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 EIF3CQ99613 913 aaKnown RBP19.84■□□□□ 0.77
CLN3-254ENST00000637050 APOBEC3GQ9HC16 384 aaKnown RBP19.84■□□□□ 0.77
CLN3-254ENST00000637050 PADI3Q9ULW8 664 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 DERAQ9Y315 318 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 CEP350Q5VT06 3117 aa19.84■□□□□ 0.77
CLN3-254ENST00000637050 RBAK-RBAKDNI3L0D1 243 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms