RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 FGD4Q96M96 766 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 EFCC1Q9HA90 598 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 PMM2O15305 246 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 CLDN3O15551 220 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 RRM1P23921 792 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 EDNRBP24530 442 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 NEDD9Q14511 834 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 METTL7BQ6UX53 244 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 C15orf39Q6ZRI6 1047 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 ANKRD13AQ8IZ07 590 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 NLRP4Q96MN2 994 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 SPATA33Q96N06 139 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 NIFKQ9BYG3 293 aaKnown RBP11.39□□□□□ -0.59
CUX1-221ENST00000622516 NUB1Q9Y5A7 615 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 SBF1O95248 1867 aa11.39□□□□□ -0.59
CUX1-221ENST00000622516 GZMAP12544 262 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 CD58P19256 250 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 TNFRSF8P28908 595 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 KCNJ1P48048 391 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 ATP1A2P50993 1020 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 KCTD2Q14681 263 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 PSMD6Q15008 389 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 TARBP2Q15633 366 aaKnown RBP11.38□□□□□ -0.59
CUX1-221ENST00000622516 MAATS1Q7Z4T9 603 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 CEP120Q8N960 986 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 CALR3Q96L12 384 aaKnown RBP11.38□□□□□ -0.59
CUX1-221ENST00000622516 ZSWIM1Q9BR11 485 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 CARD9Q9H257 536 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 PTPN22Q9Y2R2 807 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 PCDHB4Q9Y5E5 795 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 EVPLQ92817 2033 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 A0A0B4J269 797 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 B4GALT5O43286 388 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 ADCY3O60266 1144 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 ACAD10Q6JQN1 1059 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 THNSL1Q8IYQ7 743 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 IQCKQ8N0W5 287 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 MMP19Q99542 508 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 GPR20Q99678 358 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 ANAPC7Q9UJX3 599 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 SNX24Q9Y343 169 aa11.38□□□□□ -0.59
CUX1-221ENST00000622516 CCDC188H7C350 402 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 O00370 1275 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 SCP2P22307 547 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 GTF2H1P32780 548 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 PEX5P50542 639 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 CLCN3P51790 818 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 GCNT1Q02742 428 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 LAMTOR4Q0VGL1 99 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 ZSCAN26Q16670 478 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 UBL4BQ8N7F7 174 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 CCDC26Q8TAB7 109 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 FAM76AQ8TAV0 307 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 PPP1R13LQ8WUF5 828 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 C11orf70Q9BRQ4 267 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 MTMR12Q9C0I1 747 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 SPON1Q9HCB6 807 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 LRRC4CQ9HCJ2 640 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 PLAAQ9Y263 795 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 OTOFQ9HC10 1997 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 ZBTB42B2RXF5 422 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 MAFO75444 373 aaPredicted RBP11.37□□□□□ -0.59
CUX1-221ENST00000622516 TXNP10599 105 aaKnown RBP11.37□□□□□ -0.59
CUX1-221ENST00000622516 HSD17B3P37058 310 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 DR1Q01658 176 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 POU5F1Q01860 360 aaKnown RBP11.37□□□□□ -0.59
CUX1-221ENST00000622516 CLEC16AQ2KHT3 1053 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 FAM160B1Q5W0V3 765 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 UBLCP1Q8WVY7 318 aaPredicted RBP11.37□□□□□ -0.59
CUX1-221ENST00000622516 RUBCNQ92622 972 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 UPF1Q92900 1129 aaKnown RBP eCLIP11.37□□□□□ -0.59
CUX1-221ENST00000622516 AGTPBP1Q9UPW5 1226 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 UTP11Q9Y3A2 253 aaKnown RBP11.37□□□□□ -0.59
CUX1-221ENST00000622516 SPDYE5A6NIY4 337 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 H0YCG3 227 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 INO80B-WBP1J3KQ70 363 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 ATP8B3O60423 1300 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 MSCO60682 206 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 CYP1A2P05177 515 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 GJA5P36382 358 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 GJC1P36383 396 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 NOP14P78316 857 aaKnown RBP11.37□□□□□ -0.59
CUX1-221ENST00000622516 NNTQ13423 1086 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 CUL2Q13617 745 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 MOGSQ13724 837 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 NCOA4Q13772 614 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 UAP1Q16222 522 aaPredicted RBP11.37□□□□□ -0.59
CUX1-221ENST00000622516 CEP85LQ5SZL2 805 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 C11orf63Q6NUN7 778 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 TTC27Q6P3X3 843 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 SCARA5Q6ZMJ2 495 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 PRELID2Q8N945 189 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 MAGOHBQ96A72 148 aaKnown RBP11.37□□□□□ -0.59
CUX1-221ENST00000622516 VTI1AQ96AJ9 217 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 FAM118BQ9BPY3 351 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 PLCD4Q9BRC7 762 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 SYT17Q9BSW7 474 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 INO80BQ9C086 356 aaPredicted RBP11.37□□□□□ -0.59
CUX1-221ENST00000622516 RNPEPQ9H4A4 650 aa11.37□□□□□ -0.59
CUX1-221ENST00000622516 CNTNAP2Q9UHC6 1331 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms