RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 COL4A1P02462 1669 aa5.58□□□□□ -1.52
LINC00540-201ENST00000611481 SIPA1L3O60292 1781 aaPredicted RBP5.57□□□□□ -1.52
LINC00540-201ENST00000611481 GRXCR1A8MXD5 290 aa5.57□□□□□ -1.52
LINC00540-201ENST00000611481 MSCO60682 206 aa5.57□□□□□ -1.52
LINC00540-201ENST00000611481 IL18BPO95998 194 aa5.57□□□□□ -1.52
LINC00540-201ENST00000611481 LTFP02788 710 aa5.57□□□□□ -1.52
LINC00540-201ENST00000611481 ALADP13716 330 aa5.57□□□□□ -1.52
LINC00540-201ENST00000611481 MYL6BP14649 208 aa5.57□□□□□ -1.52
LINC00540-201ENST00000611481 TGM1P22735 817 aa5.57□□□□□ -1.52
LINC00540-201ENST00000611481 INHBCP55103 352 aa5.57□□□□□ -1.52
LINC00540-201ENST00000611481 DGCR2P98153 550 aa5.57□□□□□ -1.52
LINC00540-201ENST00000611481 PPIL2Q13356 520 aa5.57□□□□□ -1.52
LINC00540-201ENST00000611481 GIMAP6Q6P9H5 292 aa5.57□□□□□ -1.52
LINC00540-201ENST00000611481 DPH6Q7L8W6 267 aa5.57□□□□□ -1.52
LINC00540-201ENST00000611481 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.57□□□□□ -1.52
LINC00540-201ENST00000611481 ERO1BQ86YB8 467 aa5.57□□□□□ -1.52
LINC00540-201ENST00000611481 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.57□□□□□ -1.52
LINC00540-201ENST00000611481 COA7Q96BR5 231 aa5.57□□□□□ -1.52
LINC00540-201ENST00000611481 TACO1Q9BSH4 297 aaKnown RBP5.57□□□□□ -1.52
LINC00540-201ENST00000611481 PHF20Q9BVI0 1012 aa5.57□□□□□ -1.52
LINC00540-201ENST00000611481 PPARGC1AQ9UBK2 798 aaKnown RBP5.57□□□□□ -1.52
LINC00540-201ENST00000611481 CHD6Q8TD26 2715 aa5.57□□□□□ -1.52
LINC00540-201ENST00000611481 DCHS1Q96JQ0 3298 aa5.57□□□□□ -1.52
LINC00540-201ENST00000611481 ACACBO00763 2458 aa5.56□□□□□ -1.52
LINC00540-201ENST00000611481 RIF1Q5UIP0 2472 aaKnown RBP5.56□□□□□ -1.52
LINC00540-201ENST00000611481 CEMIPQ8WUJ3 1361 aa5.56□□□□□ -1.52
LINC00540-201ENST00000611481 AOX1Q06278 1338 aa5.56□□□□□ -1.52
LINC00540-201ENST00000611481 GPR179Q6PRD1 2367 aa5.56□□□□□ -1.52
LINC00540-201ENST00000611481 AGRPO00253 132 aa5.56□□□□□ -1.52
LINC00540-201ENST00000611481 GNAT1P11488 350 aa5.56□□□□□ -1.52
LINC00540-201ENST00000611481 COL6A2P12110 1019 aa5.56□□□□□ -1.52
LINC00540-201ENST00000611481 MMP14P50281 582 aa5.56□□□□□ -1.52
LINC00540-201ENST00000611481 FXNQ16595 210 aa5.56□□□□□ -1.52
LINC00540-201ENST00000611481 STRIP1Q5VSL9 837 aa5.56□□□□□ -1.52
LINC00540-201ENST00000611481 MAMDC4Q6UXC1 1216 aa5.56□□□□□ -1.52
LINC00540-201ENST00000611481 HERVK_113Q902F9 699 aa5.56□□□□□ -1.52
LINC00540-201ENST00000611481 EPN3Q9H201 632 aa5.56□□□□□ -1.52
LINC00540-201ENST00000611481 TRMT112Q9UI30 125 aaKnown RBP5.56□□□□□ -1.52
LINC00540-201ENST00000611481 COG5Q9UP83 839 aa5.56□□□□□ -1.52
LINC00540-201ENST00000611481 DOCK3Q8IZD9 2030 aa5.56□□□□□ -1.52
LINC00540-201ENST00000611481 CFAP47Q6ZTR5 3102 aa5.56□□□□□ -1.52
LINC00540-201ENST00000611481 PLXNA1Q9UIW2 1896 aa5.56□□□□□ -1.52
LINC00540-201ENST00000611481 SH3TC1Q8TE82 1336 aa5.55□□□□□ -1.52
LINC00540-201ENST00000611481 FAM186AA6NE01 2351 aa5.55□□□□□ -1.52
LINC00540-201ENST00000611481 A0A087X1B8 175 aa5.55□□□□□ -1.52
LINC00540-201ENST00000611481 CDC14BO60729 498 aa5.55□□□□□ -1.52
LINC00540-201ENST00000611481 GRK2P25098 689 aa5.55□□□□□ -1.52
LINC00540-201ENST00000611481 GRK3P35626 688 aa5.55□□□□□ -1.52
LINC00540-201ENST00000611481 GRIA2P42262 883 aa5.55□□□□□ -1.52
LINC00540-201ENST00000611481 RPS8P62241 208 aaKnown RBP5.55□□□□□ -1.52
LINC00540-201ENST00000611481 PPP2R2AP63151 447 aa5.55□□□□□ -1.52
LINC00540-201ENST00000611481 RNF151Q2KHN1 245 aa5.55□□□□□ -1.52
LINC00540-201ENST00000611481 ZMAT1Q5H9K5 638 aa5.55□□□□□ -1.52
LINC00540-201ENST00000611481 MRM1Q6IN84 353 aaKnown RBP5.55□□□□□ -1.52
LINC00540-201ENST00000611481 USP53Q70EK8 1073 aa5.55□□□□□ -1.52
LINC00540-201ENST00000611481 EEPD1Q7L9B9 569 aa5.55□□□□□ -1.52
LINC00540-201ENST00000611481 NEU4Q8WWR8 484 aaPredicted RBP5.55□□□□□ -1.52
LINC00540-201ENST00000611481 TRIB2Q92519 343 aa5.55□□□□□ -1.52
LINC00540-201ENST00000611481 ZKSCAN4Q969J2 545 aaPredicted RBP5.55□□□□□ -1.52
LINC00540-201ENST00000611481 PLEKHG4BQ96PX9 1271 aa5.55□□□□□ -1.52
LINC00540-201ENST00000611481 OR14A2Q96R54 314 aa5.55□□□□□ -1.52
LINC00540-201ENST00000611481 TGIF2Q9GZN2 237 aa5.55□□□□□ -1.52
LINC00540-201ENST00000611481 DSEQ9UL01 958 aa5.55□□□□□ -1.52
LINC00540-201ENST00000611481 TELO2Q9Y4R8 837 aa5.55□□□□□ -1.52
LINC00540-201ENST00000611481 ANKRD11Q6UB99 2663 aaPredicted RBP5.55□□□□□ -1.52
LINC00540-201ENST00000611481 PRRC2BQ5JSZ5 2229 aaKnown RBP5.54□□□□□ -1.52
LINC00540-201ENST00000611481 ESYT3A0FGR9 886 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 TRIM43BA6NCK2 446 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 DCXO43602 365 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 C1SP09871 688 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 ATF4P18848 351 aaPredicted RBP5.54□□□□□ -1.52
LINC00540-201ENST00000611481 ACRV1P26436 265 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 EPHA5P54756 1037 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 TCF15Q12870 199 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 TOP3AQ13472 1001 aaPredicted RBP5.54□□□□□ -1.52
LINC00540-201ENST00000611481 ST3GAL2Q16842 350 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 KIZQ2M2Z5 673 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 CFAP100Q494V2 611 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 TTLL5Q6EMB2 1281 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 LBX2Q6XYB7 198 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 IL17DQ8TAD2 202 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 CACTINQ8WUQ7 758 aaKnown RBP5.54□□□□□ -1.52
LINC00540-201ENST00000611481 TRIM43Q96BQ3 446 aaPredicted RBP5.54□□□□□ -1.52
LINC00540-201ENST00000611481 SCYL1Q96KG9 808 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 PRMT6Q96LA8 375 aaPredicted RBP5.54□□□□□ -1.52
LINC00540-201ENST00000611481 KCNJ15Q99712 375 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 DPYSL5Q9BPU6 564 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 IER2Q9BTL4 223 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 ACBD3Q9H3P7 528 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 NR2E1Q9Y466 385 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 MRVI1Q9Y6F6 885 aa5.54□□□□□ -1.52
LINC00540-201ENST00000611481 CACNA1HO95180 2353 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 SETXQ7Z333 2677 aaKnown RBP5.53□□□□□ -1.52
LINC00540-201ENST00000611481 ECM29Q5VYK3 1845 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 NKRFO15226 690 aaKnown RBP eCLIP5.53□□□□□ -1.52
LINC00540-201ENST00000611481 DLX3O60479 287 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 CCND3P30281 292 aaPredicted RBP5.53□□□□□ -1.52
LINC00540-201ENST00000611481 RPS19P39019 145 aaKnown RBP5.53□□□□□ -1.52
LINC00540-201ENST00000611481 NANOS3P60323 173 aaKnown RBP5.53□□□□□ -1.52
LINC00540-201ENST00000611481 PPATQ06203 517 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms