RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 COPB1P53618 953 aaKnown RBP15.54■□□□□ 0.08
UPF1-211ENST00000600868 KCNH2Q12809 1159 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 TMEM132DQ14C87 1099 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 VWA3BQ502W6 1294 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 DCAF17Q5H9S7 520 aaPredicted RBP15.54■□□□□ 0.08
UPF1-211ENST00000600868 TCERG1LQ5VWI1 586 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 JADE1Q6IE81 842 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 EFCAB13Q8IY85 973 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 PHOSPHO2Q8TCD6 241 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 HELQQ8TDG4 1101 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 CACTINQ8WUQ7 758 aaKnown RBP15.54■□□□□ 0.08
UPF1-211ENST00000600868 ZNF516Q92618 1163 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 KIF12Q96FN5 646 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 PPP1R10Q96QC0 940 aaKnown RBP15.54■□□□□ 0.08
UPF1-211ENST00000600868 GDF15Q99988 308 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 TMEM117Q9H0C3 514 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 SLC38A7Q9NVC3 462 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 TAB2Q9NYJ8 693 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 CXXC1Q9P0U4 656 aaPredicted RBP15.54■□□□□ 0.08
UPF1-211ENST00000600868 KANSL3Q9P2N6 904 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 TRIP11Q15643 1979 aa15.54■□□□□ 0.08
UPF1-211ENST00000600868 PDCD11Q14690 1871 aaKnown RBP15.53■□□□□ 0.08
UPF1-211ENST00000600868 PTPRJQ12913 1337 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 FSD2A1L4K1 749 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 PMM2O15305 246 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 XPOTO43592 962 aaKnown RBP15.53■□□□□ 0.08
UPF1-211ENST00000600868 DGKIO75912 1065 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 UPP2O95045 317 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 AFPP02771 609 aaKnown RBP15.53■□□□□ 0.08
UPF1-211ENST00000600868 THP07101 528 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 CYP3A5P20815 502 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 SCNN1GP51170 649 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 AFF1P51825 1210 aaKnown RBP15.53■□□□□ 0.08
UPF1-211ENST00000600868 TFAMQ00059 246 aaKnown RBP15.53■□□□□ 0.08
UPF1-211ENST00000600868 FANCCQ00597 558 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 PPP3CAQ08209 521 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 GRIK3Q13003 919 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 DUOXA2Q1HG44 320 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 NOMO2Q5JPE7 1267 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 MIIPQ5JXC2 388 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 C15orf39Q6ZRI6 1047 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 ABI1Q8IZP0 508 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 URGCPQ8TCY9 931 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 ANKRD36BP1Q96IX9 119 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 CASD1Q96PB1 797 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 SLC9A7Q96T83 725 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 NDST4Q9H3R1 872 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 TMEM8AQ9HCN3 771 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 MIOSQ9NXC5 875 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 UBQLN1Q9UMX0 589 aaKnown RBP15.53■□□□□ 0.08
UPF1-211ENST00000600868 SLC4A7Q9Y6M7 1214 aa15.53■□□□□ 0.08
UPF1-211ENST00000600868 GOLGA6L3A6NEY3 463 aa15.52■□□□□ 0.08
UPF1-211ENST00000600868 TULP1O00294 542 aaPredicted RBP15.52■□□□□ 0.08
UPF1-211ENST00000600868 N4BP1O75113 896 aaKnown RBP15.52■□□□□ 0.08
UPF1-211ENST00000600868 CAPN15O75808 1086 aa15.52■□□□□ 0.08
UPF1-211ENST00000600868 SERPINC1P01008 464 aa15.52■□□□□ 0.08
UPF1-211ENST00000600868 C4BPAP04003 597 aaKnown RBP15.52■□□□□ 0.08
UPF1-211ENST00000600868 TMEM191BP0C7N4 346 aa15.52■□□□□ 0.08
UPF1-211ENST00000600868 GCLMP48507 274 aa15.52■□□□□ 0.08
UPF1-211ENST00000600868 FMO5P49326 533 aa15.52■□□□□ 0.08
UPF1-211ENST00000600868 ZACNQ401N2 412 aa15.52■□□□□ 0.08
UPF1-211ENST00000600868 GLRA4Q5JXX5 417 aa15.52■□□□□ 0.08
UPF1-211ENST00000600868 LMBRD2Q68DH5 695 aaPredicted RBP15.52■□□□□ 0.08
UPF1-211ENST00000600868 KRT39Q6A163 491 aa15.52■□□□□ 0.08
UPF1-211ENST00000600868 SARM1Q6SZW1 724 aa15.52■□□□□ 0.08
UPF1-211ENST00000600868 BEST2Q8NFU1 509 aa15.52■□□□□ 0.08
UPF1-211ENST00000600868 OR5B17Q8NGF7 314 aa15.52■□□□□ 0.08
UPF1-211ENST00000600868 ZNF689Q96CS4 500 aaPredicted RBP15.52■□□□□ 0.08
UPF1-211ENST00000600868 MRPL9Q9BYD2 267 aaKnown RBP15.52■□□□□ 0.08
UPF1-211ENST00000600868 MTMR12Q9C0I1 747 aa15.52■□□□□ 0.08
UPF1-211ENST00000600868 VPS16Q9H269 839 aa15.52■□□□□ 0.08
UPF1-211ENST00000600868 PLAGL2Q9UPG8 496 aa15.52■□□□□ 0.08
UPF1-211ENST00000600868 INPP5FQ9Y2H2 1132 aa15.52■□□□□ 0.08
UPF1-211ENST00000600868 PTPRSQ13332 1948 aa15.51■□□□□ 0.07
UPF1-211ENST00000600868 FNDC1Q4ZHG4 1894 aaPredicted RBP15.51■□□□□ 0.07
UPF1-211ENST00000600868 A0A1B0GTH6 734 aa15.51■□□□□ 0.07
UPF1-211ENST00000600868 LGALS16A8MUM7 142 aa15.51■□□□□ 0.07
UPF1-211ENST00000600868 P4HA2O15460 535 aa15.51■□□□□ 0.07
UPF1-211ENST00000600868 GJB5O95377 273 aa15.51■□□□□ 0.07
UPF1-211ENST00000600868 POMCP01189 267 aa15.51■□□□□ 0.07
UPF1-211ENST00000600868 TNNC2P02585 160 aa15.51■□□□□ 0.07
UPF1-211ENST00000600868 BMP8BP34820 402 aa15.51■□□□□ 0.07
UPF1-211ENST00000600868 MXI1P50539 228 aa15.51■□□□□ 0.07
UPF1-211ENST00000600868 NAB2Q15742 525 aa15.51■□□□□ 0.07
UPF1-211ENST00000600868 FILIP1LQ4L180 1135 aa15.51■□□□□ 0.07
UPF1-211ENST00000600868 CBWD6Q4V339 395 aa15.51■□□□□ 0.07
UPF1-211ENST00000600868 CBWD3Q5JTY5 395 aa15.51■□□□□ 0.07
UPF1-211ENST00000600868 CBWD5Q5RIA9 395 aa15.51■□□□□ 0.07
UPF1-211ENST00000600868 TDRD10Q5VZ19 366 aaKnown RBP15.51■□□□□ 0.07
UPF1-211ENST00000600868 SV2AQ7L0J3 742 aa15.51■□□□□ 0.07
UPF1-211ENST00000600868 TRAPPC11Q7Z392 1133 aa15.51■□□□□ 0.07
UPF1-211ENST00000600868 C18orf25Q96B23 403 aaPredicted RBP15.51■□□□□ 0.07
UPF1-211ENST00000600868 UBE2OQ9C0C9 1292 aaKnown RBP15.51■□□□□ 0.07
UPF1-211ENST00000600868 RC3H2Q9HBD1 1191 aaKnown RBP15.51■□□□□ 0.07
UPF1-211ENST00000600868 RTN4Q9NQC3 1192 aaKnown RBP15.51■□□□□ 0.07
UPF1-211ENST00000600868 TBC1D13Q9NVG8 400 aa15.51■□□□□ 0.07
UPF1-211ENST00000600868 DPP3Q9NY33 737 aa15.51■□□□□ 0.07
UPF1-211ENST00000600868 GTPBP10A4D1E9 387 aaKnown RBP15.5■□□□□ 0.07
UPF1-211ENST00000600868 TBKBP1A7MCY6 615 aa15.5■□□□□ 0.07
UPF1-211ENST00000600868 ATP2A2P16615 1042 aaKnown RBP15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms