RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 ATN1P54259 1190 aaPredicted RBP14.78□□□□□ -0.04
CCDC40-209ENST00000573474 TFAMQ00059 246 aaKnown RBP14.78□□□□□ -0.04
CCDC40-209ENST00000573474 IQCEQ6IPM2 695 aa14.78□□□□□ -0.04
CCDC40-209ENST00000573474 ZSCAN30Q86W11 494 aa14.78□□□□□ -0.04
CCDC40-209ENST00000573474 NT5DC4Q86YG4 428 aa14.78□□□□□ -0.04
CCDC40-209ENST00000573474 TMEM139Q8IV31 216 aa14.78□□□□□ -0.04
CCDC40-209ENST00000573474 TSPAN18Q96SJ8 248 aa14.78□□□□□ -0.04
CCDC40-209ENST00000573474 STK33Q9BYT3 514 aa14.78□□□□□ -0.04
CCDC40-209ENST00000573474 DERAQ9Y315 318 aa14.78□□□□□ -0.04
CCDC40-209ENST00000573474 FHOD1Q9Y613 1164 aa14.78□□□□□ -0.04
CCDC40-209ENST00000573474 LRRC53A6NM62 1247 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 PITPNM1O00562 1244 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 VNN1O95497 513 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 HNRNPH3P31942 346 aaKnown RBP14.77□□□□□ -0.05
CCDC40-209ENST00000573474 PIK3CAP42336 1068 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 DSC3Q14574 896 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 MEA1Q16626 185 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 WDR44Q5JSH3 913 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 SFMBT2Q5VUG0 894 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 JADE1Q6IE81 842 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 PHLDB3Q6NSJ2 640 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 GJB7Q6PEY0 223 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 ALKAL1Q6UXT8 129 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 CYP26C1Q6V0L0 522 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 FAM43BQ6ZT52 329 aaPredicted RBP14.77□□□□□ -0.05
CCDC40-209ENST00000573474 LRRC8DQ7L1W4 858 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 TRAPPC11Q7Z392 1133 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 TMTC1Q8IUR5 882 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 EFCAB13Q8IY85 973 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 HACE1Q8IYU2 909 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 SMG8Q8ND04 991 aaKnown RBP14.77□□□□□ -0.05
CCDC40-209ENST00000573474 DIS3LQ8TF46 1054 aaKnown RBP14.77□□□□□ -0.05
CCDC40-209ENST00000573474 FAM84AQ96KN4 292 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 SNX27Q96L92 541 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 FAM81BQ96LP2 452 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 NT5C1BQ96P26 610 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 SPAG5Q96R06 1193 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 TRAIPQ9BWF2 469 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 OSBPL7Q9BZF2 842 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 MTMR12Q9C0I1 747 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 NXF3Q9H4D5 531 aaKnown RBP14.77□□□□□ -0.05
CCDC40-209ENST00000573474 UBE2TQ9NPD8 197 aaPredicted RBP14.77□□□□□ -0.05
CCDC40-209ENST00000573474 DNAJC12Q9UKB3 198 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 PLAGL2Q9UPG8 496 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 C2CD2Q9Y426 696 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 IPPQ9Y573 584 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 PCDHB2Q9Y5E7 798 aa14.77□□□□□ -0.05
CCDC40-209ENST00000573474 ARHGAP6O43182 974 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 RECQL4O94761 1208 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 NFICP08651 508 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 RAB27AP51159 221 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 JAM2P57087 298 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 CDK17Q00537 523 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 TLE2Q04725 743 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 NCOA4Q13772 614 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 RAPGEF1Q13905 1077 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 TMEM132DQ14C87 1099 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 FMNL3Q8IVF7 1028 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 ARHGEF19Q8IW93 802 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 APOL6Q9BWW8 343 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 C11orf49Q9H6J7 331 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 FAM105AQ9NUU6 356 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.76□□□□□ -0.05
CCDC40-209ENST00000573474 AIPL1Q9NZN9 384 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 CNTN3Q9P232 1028 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 PARP2Q9UGN5 583 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 PYCARDQ9ULZ3 195 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 HES2Q9Y543 173 aa14.76□□□□□ -0.05
CCDC40-209ENST00000573474 ZNF623O75123 536 aa14.75□□□□□ -0.05
CCDC40-209ENST00000573474 LRRN2O75325 713 aa14.75□□□□□ -0.05
CCDC40-209ENST00000573474 SKIP12755 728 aa14.75□□□□□ -0.05
CCDC40-209ENST00000573474 ITGA4P13612 1032 aa14.75□□□□□ -0.05
CCDC40-209ENST00000573474 AKAP5P24588 427 aa14.75□□□□□ -0.05
CCDC40-209ENST00000573474 STAT1P42224 750 aa14.75□□□□□ -0.05
CCDC40-209ENST00000573474 MFAP3P55082 362 aa14.75□□□□□ -0.05
CCDC40-209ENST00000573474 FAAP100Q0VG06 881 aa14.75□□□□□ -0.05
CCDC40-209ENST00000573474 TRPC3Q13507 836 aa14.75□□□□□ -0.05
CCDC40-209ENST00000573474 MBTPS1Q14703 1052 aa14.75□□□□□ -0.05
CCDC40-209ENST00000573474 SGSM1Q2NKQ1 1148 aa14.75□□□□□ -0.05
CCDC40-209ENST00000573474 TRIM60Q495X7 471 aa14.75□□□□□ -0.05
CCDC40-209ENST00000573474 XKR4Q5GH76 650 aa14.75□□□□□ -0.05
CCDC40-209ENST00000573474 WDR59Q6PJI9 974 aa14.75□□□□□ -0.05
CCDC40-209ENST00000573474 ENOSF1Q7L5Y1 443 aa14.75□□□□□ -0.05
CCDC40-209ENST00000573474 MRPL10Q7Z7H8 261 aaKnown RBP14.75□□□□□ -0.05
CCDC40-209ENST00000573474 KIF12Q96FN5 646 aa14.75□□□□□ -0.05
CCDC40-209ENST00000573474 ADAM2Q99965 735 aa14.75□□□□□ -0.05
CCDC40-209ENST00000573474 MCOLN1Q9GZU1 580 aa14.75□□□□□ -0.05
CCDC40-209ENST00000573474 RNF39Q9H2S5 420 aa14.75□□□□□ -0.05
CCDC40-209ENST00000573474 AJAP1Q9UKB5 411 aaPredicted RBP14.75□□□□□ -0.05
CCDC40-209ENST00000573474 MGEA5O60502 916 aa14.74□□□□□ -0.05
CCDC40-209ENST00000573474 PARNO95453 639 aaKnown RBP14.74□□□□□ -0.05
CCDC40-209ENST00000573474 CST3P01034 146 aaPredicted RBP14.74□□□□□ -0.05
CCDC40-209ENST00000573474 KCNE1P15382 129 aa14.74□□□□□ -0.05
CCDC40-209ENST00000573474 KCNJ6P48051 423 aa14.74□□□□□ -0.05
CCDC40-209ENST00000573474 DRAP1Q14919 205 aaPredicted RBP14.74□□□□□ -0.05
CCDC40-209ENST00000573474 ASIC2Q16515 512 aa14.74□□□□□ -0.05
CCDC40-209ENST00000573474 NECAB2Q7Z6G3 386 aa14.74□□□□□ -0.05
CCDC40-209ENST00000573474 PPM1KQ8N3J5 372 aa14.74□□□□□ -0.05
CCDC40-209ENST00000573474 HELQQ8TDG4 1101 aa14.74□□□□□ -0.05
CCDC40-209ENST00000573474 TAF4BQ92750 862 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms