RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 RPF1Q9H9Y2 349 aaKnown RBP9.18□□□□□ -0.94
SF3B3-212ENST00000568539 PLEKHA5Q9HAU0 1116 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 METTL14Q9HCE5 456 aaKnown RBP9.18□□□□□ -0.94
SF3B3-212ENST00000568539 UBN1Q9NPG3 1134 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 TOPORSQ9NS56 1045 aaPredicted RBP9.18□□□□□ -0.94
SF3B3-212ENST00000568539 RNF19AQ9NV58 838 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 CNTN3Q9P232 1028 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 PARP2Q9UGN5 583 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 ARMCX3Q9UH62 379 aaPredicted RBP9.18□□□□□ -0.94
SF3B3-212ENST00000568539 GIT1Q9Y2X7 761 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 PCDHGA10Q9Y5H3 936 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 ALPK3Q96L96 1907 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 ARL5CA6NH57 179 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 LACTBL1A8MY62 500 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 KCNJ18B7U540 433 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 GOLGA6L19H0YKK7 550 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 PTGESO14684 152 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 INPPL1O15357 1258 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 OFD1O75665 1012 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 IL18RAPO95256 599 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 AMHP03971 560 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 FGFR1P11362 822 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 ATP1A3P13637 1013 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 KRT13P13646 458 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 KCNE1P15382 129 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 IBSPP21815 317 aaPredicted RBP9.17□□□□□ -0.94
SF3B3-212ENST00000568539 EEF1GP26641 437 aaKnown RBP9.17□□□□□ -0.94
SF3B3-212ENST00000568539 MLH1P40692 756 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 VAMP7P51809 220 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 AFF1P51825 1210 aaKnown RBP9.17□□□□□ -0.94
SF3B3-212ENST00000568539 DLG4P78352 724 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 CLDN10P78369 228 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 PPP2R3AQ06190 1150 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 BFSP1Q12934 665 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 KCNJ12Q14500 433 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 CLLU1OSQ5K130 101 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 C1orf220Q5T0J3 134 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 RASIP1Q5U651 963 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 TRIM59Q8IWR1 403 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 CD302Q8IX05 232 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 GSTCDQ8NEC7 633 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 TOP1MTQ969P6 601 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 SLC35C1Q96A29 364 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 CCDC127Q96BQ5 260 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 ZFP42Q96MM3 310 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 GAD1Q99259 594 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 GDF15Q99988 308 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 COL25A1Q9BXS0 654 aaPredicted RBP9.17□□□□□ -0.94
SF3B3-212ENST00000568539 RSAD1Q9HA92 442 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 PDE11AQ9HCR9 933 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 KLK14Q9P0G3 267 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 CXXC1Q9P0U4 656 aaPredicted RBP9.17□□□□□ -0.94
SF3B3-212ENST00000568539 MAGEC2Q9UBF1 373 aaPredicted RBP9.17□□□□□ -0.94
SF3B3-212ENST00000568539 LRFN2Q9ULH4 789 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 PCDHB7Q9Y5E2 793 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 TRIP12Q14669 1992 aaPredicted RBP9.17□□□□□ -0.94
SF3B3-212ENST00000568539 LTBP2Q14767 1821 aa9.17□□□□□ -0.94
SF3B3-212ENST00000568539 PRUNE2Q8WUY3 3088 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 PTPRJQ12913 1337 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 SMIM28A0A1B0GU29 152 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 LRRC10BA6NIK2 292 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 LRRIQ3A6PVS8 624 aaPredicted RBP9.16□□□□□ -0.94
SF3B3-212ENST00000568539 ZBBXA8MT70 800 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 HOXA2O43364 376 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 DGKIO75912 1065 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 NFICP08651 508 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 TRIM49P0CI25 452 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 TRIM49CP0CI26 452 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 DLATP10515 647 aaKnown RBP9.16□□□□□ -0.94
SF3B3-212ENST00000568539 KCNJ6P48051 423 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 TPM4P67936 248 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 SPAG1Q07617 926 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 KRT31Q15323 416 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 SURF1Q15526 300 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 ZBTB6Q15916 424 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 DCAF17Q5H9S7 520 aaPredicted RBP9.16□□□□□ -0.94
SF3B3-212ENST00000568539 C9orf50Q5SZB4 431 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 JADE1Q6IE81 842 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 GLB1LQ6UWU2 654 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 APTXQ7Z2E3 356 aaKnown RBP9.16□□□□□ -0.94
SF3B3-212ENST00000568539 TMCO2Q7Z6W1 182 aaPredicted RBP9.16□□□□□ -0.94
SF3B3-212ENST00000568539 USP37Q86T82 979 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 CREBRFQ8IUR6 639 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 WDR49Q8IV35 697 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 PARP9Q8IXQ6 854 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 EFCAB13Q8IY85 973 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 HELQQ8TDG4 1101 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 ZMAT2Q96NC0 199 aaKnown RBP9.16□□□□□ -0.94
SF3B3-212ENST00000568539 FNBP1Q96RU3 617 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 TSPAN18Q96SJ8 248 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 POP1Q99575 1024 aaKnown RBP9.16□□□□□ -0.94
SF3B3-212ENST00000568539 CGRRF1Q99675 332 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 TUBGCP2Q9BSJ2 902 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 LIMA1Q9UHB6 759 aaKnown RBP9.16□□□□□ -0.94
SF3B3-212ENST00000568539 PLAGL2Q9UPG8 496 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 DERAQ9Y315 318 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 C2CD2Q9Y426 696 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.16□□□□□ -0.94
SF3B3-212ENST00000568539 MUC3AQ02505 3323 aa9.16□□□□□ -0.94
SF3B3-212ENST00000568539 EVPLQ92817 2033 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms