RNA–Protein interactions for RNA: ENST00000563790.5

HDGFL3-204, Transcript of HDGF like 3, humanhuman

TSL 3

Gene HDGFL3, Length 934 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-204ENST00000563790 MEIS3P2A8K0S8 358 aa12.18□□□□□ -0.46
HDGFL3-204ENST00000563790 RNF40O75150 1001 aa12.18□□□□□ -0.46
HDGFL3-204ENST00000563790 MICAL2O94851 1124 aa12.18□□□□□ -0.46
HDGFL3-204ENST00000563790 TMEM196Q5HYL7 178 aa12.18□□□□□ -0.46
HDGFL3-204ENST00000563790 AXDND1Q5T1B0 1012 aaPredicted RBP12.18□□□□□ -0.46
HDGFL3-204ENST00000563790 FSTL4Q6MZW2 842 aa12.18□□□□□ -0.46
HDGFL3-204ENST00000563790 RTL10Q7L3V2 364 aa12.18□□□□□ -0.46
HDGFL3-204ENST00000563790 RASSF3Q86WH2 238 aa12.18□□□□□ -0.46
HDGFL3-204ENST00000563790 SSH1Q8WYL5 1049 aa12.18□□□□□ -0.46
HDGFL3-204ENST00000563790 CDC6Q99741 560 aa12.18□□□□□ -0.46
HDGFL3-204ENST00000563790 GTSE1Q9NYZ3 720 aa12.18□□□□□ -0.46
HDGFL3-204ENST00000563790 PRG3Q9Y2Y8 225 aaPredicted RBP12.18□□□□□ -0.46
HDGFL3-204ENST00000563790 TSPY2A6NKD2 308 aa12.17□□□□□ -0.46
HDGFL3-204ENST00000563790 HEPACAM2A8MVW5 462 aa12.17□□□□□ -0.46
HDGFL3-204ENST00000563790 SNHG28P0DPA3 235 aa12.17□□□□□ -0.46
HDGFL3-204ENST00000563790 TOP1P11387 765 aaKnown RBP12.17□□□□□ -0.46
HDGFL3-204ENST00000563790 ACTN2P35609 894 aa12.17□□□□□ -0.46
HDGFL3-204ENST00000563790 DMC1Q14565 340 aa12.17□□□□□ -0.46
HDGFL3-204ENST00000563790 USP41Q3LFD5 358 aa12.17□□□□□ -0.46
HDGFL3-204ENST00000563790 LONRF3Q496Y0 759 aa12.17□□□□□ -0.46
HDGFL3-204ENST00000563790 SAMD3Q8N6K7 520 aa12.17□□□□□ -0.46
HDGFL3-204ENST00000563790 URGCPQ8TCY9 931 aa12.17□□□□□ -0.46
HDGFL3-204ENST00000563790 SETD7Q8WTS6 366 aaKnown RBP12.17□□□□□ -0.46
HDGFL3-204ENST00000563790 FAM193BQ96PV7 902 aaPredicted RBP12.17□□□□□ -0.46
HDGFL3-204ENST00000563790 LPIN3Q9BQK8 851 aa12.17□□□□□ -0.46
HDGFL3-204ENST00000563790 TP53BP1Q12888 1972 aaPredicted RBP12.16□□□□□ -0.46
HDGFL3-204ENST00000563790 VTNP04004 478 aa12.16□□□□□ -0.46
HDGFL3-204ENST00000563790 EIF4BP23588 611 aaKnown RBP12.16□□□□□ -0.46
HDGFL3-204ENST00000563790 HOXA13P31271 388 aaPredicted RBP12.16□□□□□ -0.46
HDGFL3-204ENST00000563790 TBC1D25Q3MII6 688 aa12.16□□□□□ -0.46
HDGFL3-204ENST00000563790 YAF2Q8IY57 180 aa12.16□□□□□ -0.46
HDGFL3-204ENST00000563790 SRRM1Q8IYB3 904 aaKnown RBP12.16□□□□□ -0.46
HDGFL3-204ENST00000563790 ZNF248Q8NDW4 579 aa12.16□□□□□ -0.46
HDGFL3-204ENST00000563790 OLIG1Q8TAK6 271 aa12.16□□□□□ -0.46
HDGFL3-204ENST00000563790 E2F7Q96AV8 911 aa12.16□□□□□ -0.46
HDGFL3-204ENST00000563790 TCEAL4Q96EI5 215 aa12.16□□□□□ -0.46
HDGFL3-204ENST00000563790 CNOT6LQ96LI5 555 aaKnown RBP12.16□□□□□ -0.46
HDGFL3-204ENST00000563790 ZSWIM3Q96MP5 696 aa12.16□□□□□ -0.46
HDGFL3-204ENST00000563790 TMEM47Q9BQJ4 181 aa12.16□□□□□ -0.46
HDGFL3-204ENST00000563790 CPVLQ9H3G5 476 aa12.16□□□□□ -0.46
HDGFL3-204ENST00000563790 PRDM16Q9HAZ2 1276 aa12.16□□□□□ -0.46
HDGFL3-204ENST00000563790 COL6A5A8TX70 2615 aa12.15□□□□□ -0.46
HDGFL3-204ENST00000563790 GOLGA8CPA6NN73 597 aa12.15□□□□□ -0.46
HDGFL3-204ENST00000563790 SKIP12755 728 aa12.15□□□□□ -0.46
HDGFL3-204ENST00000563790 KCNA2P16389 499 aa12.15□□□□□ -0.46
HDGFL3-204ENST00000563790 TDO2P48775 406 aa12.15□□□□□ -0.46
HDGFL3-204ENST00000563790 FOXK1P85037 733 aa12.15□□□□□ -0.46
HDGFL3-204ENST00000563790 GRSF1Q12849 480 aaKnown RBP eCLIP12.15□□□□□ -0.46
HDGFL3-204ENST00000563790 PTPRNQ16849 979 aa12.15□□□□□ -0.46
HDGFL3-204ENST00000563790 QRICH1Q2TAL8 776 aa12.15□□□□□ -0.46
HDGFL3-204ENST00000563790 KIAA1614Q5VZ46 1190 aa12.15□□□□□ -0.46
HDGFL3-204ENST00000563790 TSTD1Q8NFU3 115 aa12.15□□□□□ -0.46
HDGFL3-204ENST00000563790 TTC8Q8TAM2 541 aa12.15□□□□□ -0.46
HDGFL3-204ENST00000563790 CLSTN3Q9BQT9 956 aa12.15□□□□□ -0.46
HDGFL3-204ENST00000563790 GPR62Q9BZJ7 368 aa12.15□□□□□ -0.46
HDGFL3-204ENST00000563790 GPRC5CQ9NQ84 441 aa12.15□□□□□ -0.46
HDGFL3-204ENST00000563790 RTEL1Q9NZ71 1219 aa12.15□□□□□ -0.46
HDGFL3-204ENST00000563790 KANSL3Q9P2N6 904 aa12.15□□□□□ -0.46
HDGFL3-204ENST00000563790 DENND4CQ5VZ89 1909 aa12.15□□□□□ -0.46
HDGFL3-204ENST00000563790 MAP1AP78559 2803 aaPredicted RBP12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 BRINP1O60477 761 aa12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 ZNF623O75123 536 aa12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 SLC3A2P08195 630 aaKnown RBP12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 PRR29P0C7W0 189 aa12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 PTPN2P17706 415 aa12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 ITGB6P18564 788 aa12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 HNF1BP35680 557 aa12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 P2RY2P41231 377 aa12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 AFF1P51825 1210 aaKnown RBP12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 MYO1EQ12965 1108 aa12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 GPATCH4Q5T3I0 446 aaKnown RBP12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 ZNF787Q6DD87 383 aa12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 DHRS13Q6UX07 377 aa12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 XKR5Q6UX68 686 aa12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 PLPPR4Q7Z2D5 763 aa12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 ACDQ96AP0 544 aa12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 RSPRY1Q96DX4 576 aa12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 AZI2Q9H6S1 392 aa12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 ESPL1Q14674 2120 aa12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 PCSK5Q92824 1860 aa12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 ARHGEF17Q96PE2 2063 aaPredicted RBP12.14□□□□□ -0.47
HDGFL3-204ENST00000563790 ANK1P16157 1881 aa12.13□□□□□ -0.47
HDGFL3-204ENST00000563790 F8W810 466 aa12.13□□□□□ -0.47
HDGFL3-204ENST00000563790 ZNF197O14709 1029 aa12.13□□□□□ -0.47
HDGFL3-204ENST00000563790 TRDMT1O14717 391 aaKnown RBP12.13□□□□□ -0.47
HDGFL3-204ENST00000563790 SURF6O75683 361 aaKnown RBP12.13□□□□□ -0.47
HDGFL3-204ENST00000563790 LMBRD2Q68DH5 695 aaPredicted RBP12.13□□□□□ -0.47
HDGFL3-204ENST00000563790 PRSS55Q6UWB4 352 aaPredicted RBP12.13□□□□□ -0.47
HDGFL3-204ENST00000563790 COLGALT2Q8IYK4 626 aa12.13□□□□□ -0.47
HDGFL3-204ENST00000563790 RPLP0P6Q8NHW5 317 aa12.13□□□□□ -0.47
HDGFL3-204ENST00000563790 ZSCAN18Q8TBC5 510 aaPredicted RBP12.13□□□□□ -0.47
HDGFL3-204ENST00000563790 OSBP2Q969R2 916 aa12.13□□□□□ -0.47
HDGFL3-204ENST00000563790 HIC2Q96JB3 615 aa12.13□□□□□ -0.47
HDGFL3-204ENST00000563790 UBA5Q9GZZ9 404 aa12.13□□□□□ -0.47
HDGFL3-204ENST00000563790 PAG1Q9NWQ8 432 aa12.13□□□□□ -0.47
HDGFL3-204ENST00000563790 COL1A2P08123 1366 aa12.13□□□□□ -0.47
HDGFL3-204ENST00000563790 PHLPP2Q6ZVD8 1323 aa12.12□□□□□ -0.47
HDGFL3-204ENST00000563790 DCHS2Q6V1P9 2916 aa12.12□□□□□ -0.47
HDGFL3-204ENST00000563790 EGFP01133 1207 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms