RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 ELMOD1Q8N336 334 aa13.76□□□□□ -0.21
SNX1-209ENST00000559961 SYT2Q8N9I0 419 aaPredicted RBP13.76□□□□□ -0.21
SNX1-209ENST00000559961 SHDQ96IW2 340 aa13.76□□□□□ -0.21
SNX1-209ENST00000559961 PPP1R10Q96QC0 940 aaKnown RBP13.76□□□□□ -0.21
SNX1-209ENST00000559961 PLIN2Q99541 437 aa13.76□□□□□ -0.21
SNX1-209ENST00000559961 CLSTN3Q9BQT9 956 aa13.76□□□□□ -0.21
SNX1-209ENST00000559961 NTPCRQ9BSD7 190 aaKnown RBP13.76□□□□□ -0.21
SNX1-209ENST00000559961 RUSC1Q9BVN2 902 aa13.76□□□□□ -0.21
SNX1-209ENST00000559961 CDT1Q9H211 546 aa13.76□□□□□ -0.21
SNX1-209ENST00000559961 ARHGAP28Q9P2N2 729 aa13.76□□□□□ -0.21
SNX1-209ENST00000559961 ANKFY1Q9P2R3 1169 aa13.76□□□□□ -0.21
SNX1-209ENST00000559961 CACNG4Q9UBN1 327 aa13.76□□□□□ -0.21
SNX1-209ENST00000559961 WNT16Q9UBV4 365 aa13.76□□□□□ -0.21
SNX1-209ENST00000559961 FBXW11Q9UKB1 542 aa13.76□□□□□ -0.21
SNX1-209ENST00000559961 H0Y858 1186 aa13.75□□□□□ -0.21
SNX1-209ENST00000559961 PODXLO00592 558 aa13.75□□□□□ -0.21
SNX1-209ENST00000559961 PRRG1O14668 218 aa13.75□□□□□ -0.21
SNX1-209ENST00000559961 CCL16O15467 120 aa13.75□□□□□ -0.21
SNX1-209ENST00000559961 FAM13AO94988 1023 aa13.75□□□□□ -0.21
SNX1-209ENST00000559961 LRG1P02750 347 aa13.75□□□□□ -0.21
SNX1-209ENST00000559961 CFHP08603 1231 aa13.75□□□□□ -0.21
SNX1-209ENST00000559961 LAMP2P13473 410 aa13.75□□□□□ -0.21
SNX1-209ENST00000559961 FGFR3P22607 806 aa13.75□□□□□ -0.21
SNX1-209ENST00000559961 HOXA9P31269 272 aa13.75□□□□□ -0.21
SNX1-209ENST00000559961 NOLC1Q14978 699 aaKnown RBP eCLIP13.75□□□□□ -0.21
SNX1-209ENST00000559961 UPP1Q16831 310 aa13.75□□□□□ -0.21
SNX1-209ENST00000559961 BRAPQ7Z569 592 aa13.75□□□□□ -0.21
SNX1-209ENST00000559961 GRASPQ7Z6J2 395 aaPredicted RBP13.75□□□□□ -0.21
SNX1-209ENST00000559961 APPL2Q8NEU8 664 aa13.75□□□□□ -0.21
SNX1-209ENST00000559961 SLC7A14Q8TBB6 771 aa13.75□□□□□ -0.21
SNX1-209ENST00000559961 ZNF707Q96C28 371 aaPredicted RBP13.75□□□□□ -0.21
SNX1-209ENST00000559961 BACE2Q9Y5Z0 518 aa13.75□□□□□ -0.21
SNX1-209ENST00000559961 CDY1Q9Y6F8 540 aa13.75□□□□□ -0.21
SNX1-209ENST00000559961 SYN3O14994 580 aa13.74□□□□□ -0.21
SNX1-209ENST00000559961 TBCAO75347 108 aaKnown RBP13.74□□□□□ -0.21
SNX1-209ENST00000559961 SRFP11831 508 aa13.74□□□□□ -0.21
SNX1-209ENST00000559961 KCNE1P15382 129 aa13.74□□□□□ -0.21
SNX1-209ENST00000559961 MCM4P33991 863 aa13.74□□□□□ -0.21
SNX1-209ENST00000559961 LIG4P49917 911 aa13.74□□□□□ -0.21
SNX1-209ENST00000559961 ARPP19P56211 112 aa13.74□□□□□ -0.21
SNX1-209ENST00000559961 TCF15Q12870 199 aa13.74□□□□□ -0.21
SNX1-209ENST00000559961 DHX8Q14562 1220 aaKnown RBP13.74□□□□□ -0.21
SNX1-209ENST00000559961 IL17AQ16552 155 aa13.74□□□□□ -0.21
SNX1-209ENST00000559961 HYIQ5T013 277 aa13.74□□□□□ -0.21
SNX1-209ENST00000559961 ZPBP2Q6X784 338 aa13.74□□□□□ -0.21
SNX1-209ENST00000559961 SLC44A3Q8N4M1 653 aa13.74□□□□□ -0.21
SNX1-209ENST00000559961 MYCT1Q8N699 235 aa13.74□□□□□ -0.21
SNX1-209ENST00000559961 MYADMQ96S97 322 aa13.74□□□□□ -0.21
SNX1-209ENST00000559961 SMOC2Q9H3U7 446 aa13.74□□□□□ -0.21
SNX1-209ENST00000559961 ZHX3Q9H4I2 956 aa13.74□□□□□ -0.21
SNX1-209ENST00000559961 MTRRQ9UBK8 725 aa13.74□□□□□ -0.21
SNX1-209ENST00000559961 CDH7Q9ULB5 785 aa13.74□□□□□ -0.21
SNX1-209ENST00000559961 ODF2LQ9ULJ1 636 aa13.74□□□□□ -0.21
SNX1-209ENST00000559961 TECTAO75443 2155 aa13.73□□□□□ -0.21
SNX1-209ENST00000559961 CLTAP09496 248 aa13.73□□□□□ -0.21
SNX1-209ENST00000559961 PTPN2P17706 415 aa13.73□□□□□ -0.21
SNX1-209ENST00000559961 AOC1P19801 751 aa13.73□□□□□ -0.21
SNX1-209ENST00000559961 TKTP29401 623 aaKnown RBP13.73□□□□□ -0.21
SNX1-209ENST00000559961 LONP1P36776 959 aaKnown RBP13.73□□□□□ -0.21
SNX1-209ENST00000559961 TXLNAP40222 546 aa13.73□□□□□ -0.21
SNX1-209ENST00000559961 NAB2Q15742 525 aa13.73□□□□□ -0.21
SNX1-209ENST00000559961 PABPC1LQ4VXU2 614 aaKnown RBP13.73□□□□□ -0.21
SNX1-209ENST00000559961 USP37Q86T82 979 aa13.73□□□□□ -0.21
SNX1-209ENST00000559961 GPBP1Q86WP2 473 aa13.73□□□□□ -0.21
SNX1-209ENST00000559961 TMEM105Q8N8V8 129 aa13.73□□□□□ -0.21
SNX1-209ENST00000559961 RSAD2Q8WXG1 361 aa13.73□□□□□ -0.21
SNX1-209ENST00000559961 SNX27Q96L92 541 aa13.73□□□□□ -0.21
SNX1-209ENST00000559961 MMTAG2Q9BU76 263 aaKnown RBP13.73□□□□□ -0.21
SNX1-209ENST00000559961 PLEKHA5Q9HAU0 1116 aa13.73□□□□□ -0.21
SNX1-209ENST00000559961 GOLGA2P5Q9HBQ8 144 aa13.73□□□□□ -0.21
SNX1-209ENST00000559961 PTPRHQ9HD43 1115 aa13.73□□□□□ -0.21
SNX1-209ENST00000559961 CCDC39Q9UFE4 941 aa13.73□□□□□ -0.21
SNX1-209ENST00000559961 KCNH3Q9ULD8 1083 aa13.73□□□□□ -0.21
SNX1-209ENST00000559961 CA14Q9ULX7 337 aa13.73□□□□□ -0.21
SNX1-209ENST00000559961 MRPS23Q9Y3D9 190 aaKnown RBP13.73□□□□□ -0.21
SNX1-209ENST00000559961 ARID2Q68CP9 1835 aa13.73□□□□□ -0.21
SNX1-209ENST00000559961 MUC6Q6W4X9 2439 aa13.73□□□□□ -0.21
SNX1-209ENST00000559961 ARHGEF37A1IGU5 675 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 VPS37CA5D8V6 355 aaPredicted RBP13.72□□□□□ -0.21
SNX1-209ENST00000559961 ZNF197O14709 1029 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 HNRNPDLO14979 420 aaKnown RBP13.72□□□□□ -0.21
SNX1-209ENST00000559961 GFRA3O60609 400 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 PAPLNO95428 1278 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 EDN1P05305 212 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 POU2F2P09086 479 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 MAPTP10636 758 aaKnown RBP13.72□□□□□ -0.21
SNX1-209ENST00000559961 BRCC3P46736 316 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 PFKPQ01813 784 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 PPP2R3AQ06190 1150 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 CTXN3Q4LDR2 81 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 XKR4Q5GH76 650 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 IQCEQ6IPM2 695 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 ZNF280DQ6N043 979 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 ALKAL1Q6UXT8 129 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 HAUS6Q7Z4H7 955 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 DAW1Q8N136 415 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 CEP120Q8N960 986 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 KRI1Q8N9T8 703 aaKnown RBP13.72□□□□□ -0.21
SNX1-209ENST00000559961 TMEM161BQ8NDZ6 487 aa13.72□□□□□ -0.21
SNX1-209ENST00000559961 ZNF461Q8TAF7 563 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms