RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 RAD54LQ92698 747 aa19.42■□□□□ 0.7
HDDC3-205ENST00000559898 DDX27Q96GQ7 796 aaKnown RBP19.42■□□□□ 0.7
HDDC3-205ENST00000559898 MFSD14AQ96MC6 490 aa19.42■□□□□ 0.7
HDDC3-205ENST00000559898 FIZ1Q96SL8 496 aa19.42■□□□□ 0.7
HDDC3-205ENST00000559898 CCDC94Q9BW85 323 aaPredicted RBP19.42■□□□□ 0.7
HDDC3-205ENST00000559898 WDR6Q9NNW5 1121 aaKnown RBP19.42■□□□□ 0.7
HDDC3-205ENST00000559898 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.42■□□□□ 0.7
HDDC3-205ENST00000559898 TUBGCP4Q9UGJ1 667 aa19.42■□□□□ 0.7
HDDC3-205ENST00000559898 FBXO2Q9UK22 296 aaPredicted RBP19.42■□□□□ 0.7
HDDC3-205ENST00000559898 FBXW11Q9UKB1 542 aa19.42■□□□□ 0.7
HDDC3-205ENST00000559898 USTQ9Y2C2 406 aa19.42■□□□□ 0.7
HDDC3-205ENST00000559898 RBM19Q9Y4C8 960 aaKnown RBP19.42■□□□□ 0.7
HDDC3-205ENST00000559898 ARIH1Q9Y4X5 557 aaPredicted RBP19.42■□□□□ 0.7
HDDC3-205ENST00000559898 MYH15Q9Y2K3 1946 aa19.42■□□□□ 0.7
HDDC3-205ENST00000559898 CLUHO75153 1309 aa19.42■□□□□ 0.7
HDDC3-205ENST00000559898 ANK1P16157 1881 aa19.41■□□□□ 0.7
HDDC3-205ENST00000559898 COL4A3Q01955 1670 aa19.41■□□□□ 0.7
HDDC3-205ENST00000559898 TISP43B9A030 160 aa19.41■□□□□ 0.7
HDDC3-205ENST00000559898 TMEM189-UBE2V1I3L0A0 370 aa19.41■□□□□ 0.7
HDDC3-205ENST00000559898 ZMYND10O75800 440 aa19.41■□□□□ 0.7
HDDC3-205ENST00000559898 PAPLNO95428 1278 aa19.41■□□□□ 0.7
HDDC3-205ENST00000559898 NMT1P30419 496 aaKnown RBP19.41■□□□□ 0.7
HDDC3-205ENST00000559898 OR1D2P34982 312 aa19.41■□□□□ 0.7
HDDC3-205ENST00000559898 UBA7P41226 1012 aa19.41■□□□□ 0.7
HDDC3-205ENST00000559898 SLC39A4Q6P5W5 647 aa19.41■□□□□ 0.7
HDDC3-205ENST00000559898 DCLRE1AQ6PJP8 1040 aa19.41■□□□□ 0.7
HDDC3-205ENST00000559898 HAUS6Q7Z4H7 955 aa19.41■□□□□ 0.7
HDDC3-205ENST00000559898 AK8Q96MA6 479 aa19.41■□□□□ 0.7
HDDC3-205ENST00000559898 ACAP3Q96P50 834 aa19.41■□□□□ 0.7
HDDC3-205ENST00000559898 TIPINQ9BVW5 301 aa19.41■□□□□ 0.7
HDDC3-205ENST00000559898 C17orf75Q9HAS0 396 aa19.41■□□□□ 0.7
HDDC3-205ENST00000559898 CNTN3Q9P232 1028 aa19.41■□□□□ 0.7
HDDC3-205ENST00000559898 PODXLO00592 558 aa19.4■□□□□ 0.7
HDDC3-205ENST00000559898 CCL16O15467 120 aa19.4■□□□□ 0.7
HDDC3-205ENST00000559898 CXCL8P10145 99 aa19.4■□□□□ 0.7
HDDC3-205ENST00000559898 KCNE1P15382 129 aa19.4■□□□□ 0.7
HDDC3-205ENST00000559898 GUCY2FP51841 1108 aa19.4■□□□□ 0.7
HDDC3-205ENST00000559898 YARSP54577 528 aaKnown RBP19.4■□□□□ 0.7
HDDC3-205ENST00000559898 NHLH1Q02575 133 aa19.4■□□□□ 0.7
HDDC3-205ENST00000559898 MTMR3Q13615 1198 aa19.4■□□□□ 0.7
HDDC3-205ENST00000559898 NOLC1Q14978 699 aaKnown RBP eCLIP19.4■□□□□ 0.7
HDDC3-205ENST00000559898 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.4■□□□□ 0.7
HDDC3-205ENST00000559898 GPR65Q8IYL9 337 aa19.4■□□□□ 0.7
HDDC3-205ENST00000559898 CALML4Q96GE6 196 aa19.4■□□□□ 0.7
HDDC3-205ENST00000559898 PRKD2Q9BZL6 878 aa19.4■□□□□ 0.7
HDDC3-205ENST00000559898 KCNK12Q9HB15 430 aa19.4■□□□□ 0.7
HDDC3-205ENST00000559898 MTRRQ9UBK8 725 aa19.4■□□□□ 0.7
HDDC3-205ENST00000559898 MTMR6Q9Y217 621 aa19.4■□□□□ 0.7
HDDC3-205ENST00000559898 CDY1Q9Y6F8 540 aa19.4■□□□□ 0.7
HDDC3-205ENST00000559898 ZDBF2Q9HCK1 2354 aa19.4■□□□□ 0.7
HDDC3-205ENST00000559898 A0A087X0B3 334 aa19.39■□□□□ 0.69
HDDC3-205ENST00000559898 FAM189A1O60320 539 aa19.39■□□□□ 0.69
HDDC3-205ENST00000559898 TOM1L1O75674 476 aa19.39■□□□□ 0.69
HDDC3-205ENST00000559898 HOXD11P31277 338 aaPredicted RBP19.39■□□□□ 0.69
HDDC3-205ENST00000559898 GBP2P32456 591 aaPredicted RBP19.39■□□□□ 0.69
HDDC3-205ENST00000559898 LONP1P36776 959 aaKnown RBP19.39■□□□□ 0.69
HDDC3-205ENST00000559898 ZNF131P52739 623 aa19.39■□□□□ 0.69
HDDC3-205ENST00000559898 MCL1Q07820 350 aa19.39■□□□□ 0.69
HDDC3-205ENST00000559898 TCF15Q12870 199 aa19.39■□□□□ 0.69
HDDC3-205ENST00000559898 STRN3Q13033 797 aa19.39■□□□□ 0.69
HDDC3-205ENST00000559898 POTEHQ6S545 545 aa19.39■□□□□ 0.69
HDDC3-205ENST00000559898 GET4Q7L5D6 327 aaPredicted RBP19.39■□□□□ 0.69
HDDC3-205ENST00000559898 OTOP3Q7RTS5 596 aa19.39■□□□□ 0.69
HDDC3-205ENST00000559898 GRASPQ7Z6J2 395 aaPredicted RBP19.39■□□□□ 0.69
HDDC3-205ENST00000559898 PLCD3Q8N3E9 789 aa19.39■□□□□ 0.69
HDDC3-205ENST00000559898 MYCT1Q8N699 235 aa19.39■□□□□ 0.69
HDDC3-205ENST00000559898 ZHX3Q9H4I2 956 aa19.39■□□□□ 0.69
HDDC3-205ENST00000559898 PLEKHA4Q9H4M7 779 aa19.39■□□□□ 0.69
HDDC3-205ENST00000559898 HCFC1R1Q9NWW0 138 aa19.39■□□□□ 0.69
HDDC3-205ENST00000559898 ANKRD63C9JTQ0 380 aa19.38■□□□□ 0.69
HDDC3-205ENST00000559898 K7ENM7 598 aa19.38■□□□□ 0.69
HDDC3-205ENST00000559898 C8AP07357 584 aa19.38■□□□□ 0.69
HDDC3-205ENST00000559898 AVPR2P30518 371 aa19.38■□□□□ 0.69
HDDC3-205ENST00000559898 ZC2HC1CQ53FD0 456 aaPredicted RBP19.38■□□□□ 0.69
HDDC3-205ENST00000559898 ALYREFQ86V81 257 aaKnown RBP19.38■□□□□ 0.69
HDDC3-205ENST00000559898 HDAC7Q8WUI4 952 aa19.38■□□□□ 0.69
HDDC3-205ENST00000559898 ACSF2Q96CM8 615 aaPredicted RBP19.38■□□□□ 0.69
HDDC3-205ENST00000559898 USP28Q96RU2 1077 aa19.38■□□□□ 0.69
HDDC3-205ENST00000559898 RPP25Q9BUL9 199 aaKnown RBP19.38■□□□□ 0.69
HDDC3-205ENST00000559898 CCSER1Q9C0I3 900 aa19.38■□□□□ 0.69
HDDC3-205ENST00000559898 PIDD1Q9HB75 910 aa19.38■□□□□ 0.69
HDDC3-205ENST00000559898 TOPORSQ9NS56 1045 aaPredicted RBP19.38■□□□□ 0.69
HDDC3-205ENST00000559898 ZDHHC7Q9NXF8 308 aa19.38■□□□□ 0.69
HDDC3-205ENST00000559898 KCND2Q9NZV8 630 aa19.38■□□□□ 0.69
HDDC3-205ENST00000559898 TBX20Q9UMR3 447 aa19.38■□□□□ 0.69
HDDC3-205ENST00000559898 NRG2O14511 850 aaPredicted RBP19.37■□□□□ 0.69
HDDC3-205ENST00000559898 PPEF2O14830 753 aa19.37■□□□□ 0.69
HDDC3-205ENST00000559898 MATR3P43243 847 aaKnown RBP eCLIP19.37■□□□□ 0.69
HDDC3-205ENST00000559898 SMTNP53814 917 aa19.37■□□□□ 0.69
HDDC3-205ENST00000559898 RAB33AQ14088 237 aa19.37■□□□□ 0.69
HDDC3-205ENST00000559898 ZPBP2Q6X784 338 aa19.37■□□□□ 0.69
HDDC3-205ENST00000559898 SUGP1Q8IWZ8 645 aaKnown RBP19.37■□□□□ 0.69
HDDC3-205ENST00000559898 UBALD2Q8IYN6 164 aa19.37■□□□□ 0.69
HDDC3-205ENST00000559898 TMEM105Q8N8V8 129 aa19.37■□□□□ 0.69
HDDC3-205ENST00000559898 SLC7A14Q8TBB6 771 aa19.37■□□□□ 0.69
HDDC3-205ENST00000559898 LARP4BQ92615 738 aaKnown RBP19.37■□□□□ 0.69
HDDC3-205ENST00000559898 BICD1Q96G01 975 aa19.37■□□□□ 0.69
HDDC3-205ENST00000559898 UROC1Q96N76 676 aa19.37■□□□□ 0.69
HDDC3-205ENST00000559898 ODF2LQ9ULJ1 636 aa19.37■□□□□ 0.69
HDDC3-205ENST00000559898 TTC26A0AVF1 554 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms