RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 ALKAL1Q6UXT8 129 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 USP37Q86T82 979 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 TRIM59Q8IWR1 403 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 CD302Q8IX05 232 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 CRIPAKQ8N1N5 446 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 ANKRD20A12PQ8NF67 263 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 HELQQ8TDG4 1101 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 TMC2Q8TDI7 906 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 ZFP42Q96MM3 310 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 RPS6KC1Q96S38 1066 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 GAD1Q99259 594 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 TUBGCP2Q9BSJ2 902 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 ASB7Q9H672 318 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 MMRN2Q9H8L6 949 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 PLEKHA5Q9HAU0 1116 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 TAB2Q9NYJ8 693 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 LIMA1Q9UHB6 759 aaKnown RBP10.42□□□□□ -0.74
CUX1-216ENST00000558469 GIT1Q9Y2X7 761 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.42□□□□□ -0.74
CUX1-216ENST00000558469 SCN1AP35498 2009 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 NLRC5Q86WI3 1866 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 SMIM28A0A1B0GU29 152 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 LRRIQ3A6PVS8 624 aaPredicted RBP10.41□□□□□ -0.74
CUX1-216ENST00000558469 PES1O00541 588 aaKnown RBP10.41□□□□□ -0.74
CUX1-216ENST00000558469 RIOK3O14730 519 aaKnown RBP10.41□□□□□ -0.74
CUX1-216ENST00000558469 OFD1O75665 1012 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 SERPINC1P01008 464 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 TPM2P07951 284 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 NFICP08651 508 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 AFF1P51825 1210 aaKnown RBP10.41□□□□□ -0.74
CUX1-216ENST00000558469 PLCB2Q00722 1185 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 KCNH2Q12809 1159 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 TMEM132DQ14C87 1099 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 MAN2A1Q16706 1144 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 MIIPQ5JXC2 388 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 GLRA4Q5JXX5 417 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 CLLU1OSQ5K130 101 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 C1orf220Q5T0J3 134 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 JADE1Q6IE81 842 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 FAM117BQ6P1L5 589 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 GLB1LQ6UWU2 654 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 TMCO2Q7Z6W1 182 aaPredicted RBP10.41□□□□□ -0.74
CUX1-216ENST00000558469 NPAS4Q8IUM7 802 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 HERVK_113Q902F9 699 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 ZNF516Q92618 1163 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 TOP1MTQ969P6 601 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 SLC35C1Q96A29 364 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 FAM84AQ96KN4 292 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 ZMAT2Q96NC0 199 aaKnown RBP10.41□□□□□ -0.74
CUX1-216ENST00000558469 CGRRF1Q99675 332 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 VPS16Q9H269 839 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 MIOSQ9NXC5 875 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 CXXC1Q9P0U4 656 aaPredicted RBP10.41□□□□□ -0.74
CUX1-216ENST00000558469 CNTN3Q9P232 1028 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 INPP5FQ9Y2H2 1132 aa10.41□□□□□ -0.74
CUX1-216ENST00000558469 PTPRJQ12913 1337 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 GOLGA6L3A6NEY3 463 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 H0YGN5 161 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 PTGESO14684 152 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 HOXA2O43364 376 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 STX10O60499 249 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 POMCP01189 267 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 AFPP02771 609 aaKnown RBP10.4□□□□□ -0.74
CUX1-216ENST00000558469 THP07101 528 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 TMEM191BP0C7N4 346 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 KCNE1P15382 129 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 GCLMP48507 274 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 GATMP50440 423 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 SCNN1GP51170 649 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 COPB1P53618 953 aaKnown RBP10.4□□□□□ -0.74
CUX1-216ENST00000558469 MCCD1P59942 119 aaPredicted RBP10.4□□□□□ -0.74
CUX1-216ENST00000558469 CLDN10P78369 228 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 TFAMQ00059 246 aaKnown RBP10.4□□□□□ -0.74
CUX1-216ENST00000558469 FANCCQ00597 558 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 ENPEPQ07075 957 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 PPP3CAQ08209 521 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 UVSSAQ2YD98 709 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 VWA3BQ502W6 1294 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 XKR4Q5GH76 650 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 NOMO2Q5JPE7 1267 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 WDR49Q8IV35 697 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 EFCAB13Q8IY85 973 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 ABI1Q8IZP0 508 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 GSTCDQ8NEC7 633 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 URGCPQ8TCY9 931 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 CACTINQ8WUQ7 758 aaKnown RBP10.4□□□□□ -0.74
CUX1-216ENST00000558469 C18orf25Q96B23 403 aaPredicted RBP10.4□□□□□ -0.74
CUX1-216ENST00000558469 ANKRD36BP1Q96IX9 119 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 MTMR12Q9C0I1 747 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 NDST4Q9H3R1 872 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 INTS13Q9NVM9 706 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 PLAGL2Q9UPG8 496 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 DERAQ9Y315 318 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 SLC4A7Q9Y6M7 1214 aa10.4□□□□□ -0.74
CUX1-216ENST00000558469 PDE4DIPQ5VU43 2346 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 COL4A6Q14031 1691 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 LRRC10BA6NIK2 292 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 TBKBP1A7MCY6 615 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 PHACTR2O75167 634 aa10.39□□□□□ -0.75
CUX1-216ENST00000558469 DGKIO75912 1065 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms