RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 ANO9A1A5B4 782 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 CCDC85CA6NKD9 419 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 HOXA2O43364 376 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 EVI5O60447 810 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 ZC3H11AO75152 810 aaKnown RBP eCLIP10.37□□□□□ -0.75
LIMA1-211ENST00000552338 OFD1O75665 1012 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 RECQL4O94761 1208 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 SERPINC1P01008 464 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 TPM3P06753 285 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 ITGA4P13612 1032 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 PAX3P23760 479 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 LRPAP1P30533 357 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 KCNMA1Q12791 1236 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 DUOXA2Q1HG44 320 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 EPC2Q52LR7 807 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 SEZ6Q53EL9 994 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 RASIP1Q5U651 963 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 NPAS4Q8IUM7 802 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 EFCAB13Q8IY85 973 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 CACTINQ8WUQ7 758 aaKnown RBP10.37□□□□□ -0.75
LIMA1-211ENST00000552338 TOP1MTQ969P6 601 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 ZNF689Q96CS4 500 aaPredicted RBP10.37□□□□□ -0.75
LIMA1-211ENST00000552338 ZMAT2Q96NC0 199 aaKnown RBP10.37□□□□□ -0.75
LIMA1-211ENST00000552338 FNBP1Q96RU3 617 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 EDEM3Q9BZQ6 932 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 XPO4Q9C0E2 1151 aaKnown RBP10.37□□□□□ -0.75
LIMA1-211ENST00000552338 FAM124BQ9H5Z6 455 aaPredicted RBP10.37□□□□□ -0.75
LIMA1-211ENST00000552338 RSAD1Q9HA92 442 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 PLCB1Q9NQ66 1216 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 KANSL3Q9P2N6 904 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 UBQLN1Q9UMX0 589 aaKnown RBP10.37□□□□□ -0.75
LIMA1-211ENST00000552338 SIK3Q9Y2K2 1263 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 HES2Q9Y543 173 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 MKI67P46013 3256 aaKnown RBP10.36□□□□□ -0.75
LIMA1-211ENST00000552338 PTGESO14684 152 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 TEX33O43247 280 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 XPOTO43592 962 aaKnown RBP10.36□□□□□ -0.75
LIMA1-211ENST00000552338 FAM163BP0C2L3 166 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 ACTN1P12814 892 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 ZNF75DP51815 510 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 FPGSQ05932 587 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 ARID5BQ14865 1188 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 CBWD6Q4V339 395 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 CBWD3Q5JTY5 395 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 CBWD5Q5RIA9 395 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 TMEM240Q5SV17 173 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 JADE1Q6IE81 842 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 PSRC1Q6PGN9 363 aaPredicted RBP10.36□□□□□ -0.75
LIMA1-211ENST00000552338 PHOSPHO2Q8TCD6 241 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 HERVK_113Q902F9 699 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 TAF4BQ92750 862 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 BADQ92934 168 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 PDLIM2Q96JY6 352 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 VPS16Q9H269 839 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 RC3H2Q9HBD1 1191 aaKnown RBP10.36□□□□□ -0.75
LIMA1-211ENST00000552338 SLC38A7Q9NVC3 462 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 MIOSQ9NXC5 875 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 TAB2Q9NYJ8 693 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 IFNKQ9P0W0 207 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 ITGA11Q9UKX5 1188 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 NR2E3Q9Y5X4 410 aa10.36□□□□□ -0.75
LIMA1-211ENST00000552338 PTPRJQ12913 1337 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 CARNS1A5YM72 827 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 ARL5CA6NH57 179 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 MEIS3P2A8K0S8 358 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 PIRO00625 290 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 DGKIO75912 1065 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 VNN1O95497 513 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 FGBP02675 491 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 THP07101 528 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 HARSP12081 509 aaKnown RBP10.35□□□□□ -0.75
LIMA1-211ENST00000552338 TNNI1P19237 187 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 AKAP5P24588 427 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 ATICP31939 592 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 MXI1P50539 228 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 OSTNP61366 133 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 DSC1Q08554 894 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 CETN1Q12798 172 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 GRIK3Q13003 919 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 HSP90AA4PQ58FG1 418 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 CLLU1OSQ5K130 101 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 FKBP15Q5T1M5 1219 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 TDRD10Q5VZ19 366 aaKnown RBP10.35□□□□□ -0.75
LIMA1-211ENST00000552338 TRAPPC11Q7Z392 1133 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 DEFB128Q7Z7B8 93 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 VSTM4Q8IW00 320 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 C7orf61Q8IZ16 206 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 LRRC52Q8N7C0 313 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 C1orf127Q8N9H9 656 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 EHBP1Q8NDI1 1231 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 FBXL13Q8NEE6 735 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 OR5B17Q8NGF7 314 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 JAKMIP2Q96AA8 810 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 CCDC127Q96BQ5 260 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 ANKRD36BP1Q96IX9 119 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 FAM81BQ96LP2 452 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 POP1Q99575 1024 aaKnown RBP10.35□□□□□ -0.75
LIMA1-211ENST00000552338 NUP58Q9BVL2 599 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 TRIM5Q9C035 493 aa10.35□□□□□ -0.75
LIMA1-211ENST00000552338 TTYH3Q9C0H2 523 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms