RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 PNMA5Q96PV4 448 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 CLSTN3Q9BQT9 956 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 TARS2Q9BW92 718 aaKnown RBP11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 MFSD1Q9H3U5 465 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 PLEKHA5Q9HAU0 1116 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 FBXW11Q9UKB1 542 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 SFI1A8K8P3 1242 aa11.9□□□□□ -0.5
VTI1BP3-201ENST00000550220 H7C4K7 107 aa11.9□□□□□ -0.5
VTI1BP3-201ENST00000550220 SYN3O14994 580 aa11.9□□□□□ -0.5
VTI1BP3-201ENST00000550220 CD2BP2O95400 341 aaKnown RBP11.9□□□□□ -0.5
VTI1BP3-201ENST00000550220 RPL17P18621 184 aaKnown RBP11.9□□□□□ -0.5
VTI1BP3-201ENST00000550220 CLCNKBP51801 687 aa11.9□□□□□ -0.5
VTI1BP3-201ENST00000550220 GLRA4Q5JXX5 417 aa11.9□□□□□ -0.5
VTI1BP3-201ENST00000550220 ASTLQ6HA08 431 aaPredicted RBP11.9□□□□□ -0.5
VTI1BP3-201ENST00000550220 GLYCTKQ8IVS8 523 aa11.9□□□□□ -0.5
VTI1BP3-201ENST00000550220 RASSF8Q8NHQ8 419 aa11.9□□□□□ -0.5
VTI1BP3-201ENST00000550220 SNX27Q96L92 541 aa11.9□□□□□ -0.5
VTI1BP3-201ENST00000550220 CNTN3Q9P232 1028 aa11.9□□□□□ -0.5
VTI1BP3-201ENST00000550220 MTRRQ9UBK8 725 aa11.9□□□□□ -0.5
VTI1BP3-201ENST00000550220 WNT16Q9UBV4 365 aa11.9□□□□□ -0.5
VTI1BP3-201ENST00000550220 FBXL21Q9UKT6 434 aa11.9□□□□□ -0.5
VTI1BP3-201ENST00000550220 DUSP12Q9UNI6 340 aa11.9□□□□□ -0.5
VTI1BP3-201ENST00000550220 ZNF318Q5VUA4 2279 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 PODXLO00592 558 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 ABLIM1O14639 778 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 C8AP07357 584 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 CLTAP09496 248 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 MAPTP10636 758 aaKnown RBP11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 LAMP2P13473 410 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 PAX3P23760 479 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 FSHRP23945 695 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 OR1D2P34982 312 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 OSTNP61366 133 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 MCL1Q07820 350 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 CUL4AQ13619 759 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 NOLC1Q14978 699 aaKnown RBP eCLIP11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 IER5LQ5T953 404 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 TAS1R3Q7RTX0 852 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 APPL2Q8NEU8 664 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 PLIN2Q99541 437 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 RTP3Q9BQQ7 232 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 OXCT2Q9BYC2 517 aaPredicted RBP11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 PARVGQ9HBI0 331 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 CACNG4Q9UBN1 327 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 KCNH3Q9ULD8 1083 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 MAFFQ9ULX9 164 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 NUB1Q9Y5A7 615 aa11.89□□□□□ -0.51
VTI1BP3-201ENST00000550220 XPOTO43592 962 aaKnown RBP11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 GALR2O43603 387 aaPredicted RBP11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 FAM13AO94988 1023 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 KRT18P05783 430 aaKnown RBP11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 CYP3A5P20815 502 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 ELF1P32519 619 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 DDIT3P35638 169 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 MATR3P43243 847 aaKnown RBP eCLIP11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 MRE11P49959 708 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 NCKAP1LP55160 1127 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 RAD51AP2Q09MP3 1159 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 SF3A1Q15459 793 aaKnown RBP11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 SLC8B1Q6J4K2 584 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 HAUS6Q7Z4H7 955 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 ALYREFQ86V81 257 aaKnown RBP11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 GPBP1Q86WP2 473 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 CD302Q8IX05 232 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 SLC44A3Q8N4M1 653 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 MYCT1Q8N699 235 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 CEP120Q8N960 986 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 PRSS33Q8NF86 280 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 ZNF461Q8TAF7 563 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 BICD1Q96G01 975 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 CCSER1Q9C0I3 900 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 CXCL16Q9H2A7 254 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 ANKFY1Q9P2R3 1169 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 CCDC39Q9UFE4 941 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 CDH7Q9ULB5 785 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 CDY1Q9Y6F8 540 aa11.88□□□□□ -0.51
VTI1BP3-201ENST00000550220 ANHXE9PGG2 379 aa11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 HNRNPDLO14979 420 aaKnown RBP11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 TRAK2O60296 914 aa11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 TBCAO75347 108 aaKnown RBP11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 PIGRP01833 764 aa11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 MYBP10242 640 aa11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 SRFP11831 508 aa11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 TKTP29401 623 aaKnown RBP11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 MARCKSP29966 332 aaPredicted RBP11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 TXLNAP40222 546 aa11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 LIG4P49917 911 aa11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 ZNF131P52739 623 aa11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 VCPP55072 806 aaKnown RBP11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 TCF15Q12870 199 aa11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 SLC10A6Q3KNW5 377 aa11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 ARSHQ5FYA8 562 aa11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 AXDND1Q5T1B0 1012 aaPredicted RBP11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 TPGS2Q68CL5 300 aa11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 CD300LGQ6UXG3 332 aa11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 MTSS1LQ765P7 747 aa11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 GET4Q7L5D6 327 aaPredicted RBP11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 KRI1Q8N9T8 703 aaKnown RBP11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 RAD54LQ92698 747 aa11.87□□□□□ -0.51
VTI1BP3-201ENST00000550220 INTS4Q96HW7 963 aaKnown RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms