RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 THP07101 528 aa17.33■□□□□ 0.36
CHMP4A-207ENST00000533523 ATP2B1P20020 1258 aa17.33■□□□□ 0.36
CHMP4A-207ENST00000533523 TRAPPC10P48553 1259 aa17.33■□□□□ 0.36
CHMP4A-207ENST00000533523 PRPF4BQ13523 1007 aaKnown RBP17.33■□□□□ 0.36
CHMP4A-207ENST00000533523 PARM1Q6UWI2 310 aa17.33■□□□□ 0.36
CHMP4A-207ENST00000533523 C1orf210Q8IVY1 113 aa17.33■□□□□ 0.36
CHMP4A-207ENST00000533523 SLC7A14Q8TBB6 771 aa17.33■□□□□ 0.36
CHMP4A-207ENST00000533523 CLSTN3Q9BQT9 956 aa17.33■□□□□ 0.36
CHMP4A-207ENST00000533523 ADPGKQ9BRR6 497 aa17.33■□□□□ 0.36
CHMP4A-207ENST00000533523 C2orf40Q9H1Z8 148 aa17.33■□□□□ 0.36
CHMP4A-207ENST00000533523 ADAM12O43184 909 aa17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 LRRN2O75325 713 aa17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 SP9P0CG40 484 aa17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 MCM7P33993 719 aa17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 GPC5P78333 572 aa17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 ELAVL2Q12926 359 aaKnown RBP17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 MAPK6Q16659 721 aa17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 FAM187BQ17R55 369 aa17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 MTSS1LQ765P7 747 aa17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 NOSTRINQ8IVI9 506 aa17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 DEPTORQ8TB45 409 aa17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 LNX1Q8TBB1 728 aaPredicted RBP17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 BSNDQ8WZ55 320 aa17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 FGF13Q92913 245 aa17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 SHDQ96IW2 340 aa17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 MTMR9Q96QG7 549 aa17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 RPP25Q9BUL9 199 aaKnown RBP17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 CXCL16Q9H2A7 254 aa17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 TMEM60Q9H2L4 133 aa17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 TUFT1Q9NNX1 390 aa17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 USP20Q9Y2K6 914 aa17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 GDAQ9Y2T3 454 aa17.32■□□□□ 0.36
CHMP4A-207ENST00000533523 ARHGEF35A5YM69 484 aa17.31■□□□□ 0.36
CHMP4A-207ENST00000533523 MED24O75448 989 aa17.31■□□□□ 0.36
CHMP4A-207ENST00000533523 SPATA31C1P0DKV0 1188 aa17.31■□□□□ 0.36
CHMP4A-207ENST00000533523 HOXA9P31269 272 aa17.31■□□□□ 0.36
CHMP4A-207ENST00000533523 SNW1Q13573 536 aaKnown RBP17.31■□□□□ 0.36
CHMP4A-207ENST00000533523 GLRA4Q5JXX5 417 aa17.31■□□□□ 0.36
CHMP4A-207ENST00000533523 AXDND1Q5T1B0 1012 aaPredicted RBP17.31■□□□□ 0.36
CHMP4A-207ENST00000533523 PDXDC1Q6P996 788 aa17.31■□□□□ 0.36
CHMP4A-207ENST00000533523 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.31■□□□□ 0.36
CHMP4A-207ENST00000533523 ITFG1Q8TB96 612 aa17.31■□□□□ 0.36
CHMP4A-207ENST00000533523 ING5Q8WYH8 240 aa17.31■□□□□ 0.36
CHMP4A-207ENST00000533523 KXD1Q9BQD3 176 aa17.31■□□□□ 0.36
CHMP4A-207ENST00000533523 FZD8Q9H461 694 aa17.31■□□□□ 0.36
CHMP4A-207ENST00000533523 HCFC1R1Q9NWW0 138 aa17.31■□□□□ 0.36
CHMP4A-207ENST00000533523 CIZ1Q9ULV3 898 aaPredicted RBP17.31■□□□□ 0.36
CHMP4A-207ENST00000533523 TICRRQ7Z2Z1 1910 aa17.3■□□□□ 0.36
CHMP4A-207ENST00000533523 EDN1P05305 212 aa17.3■□□□□ 0.36
CHMP4A-207ENST00000533523 XRCC6P12956 609 aaKnown RBP eCLIP17.3■□□□□ 0.36
CHMP4A-207ENST00000533523 PDCP20941 246 aa17.3■□□□□ 0.36
CHMP4A-207ENST00000533523 STARD6P59095 220 aa17.3■□□□□ 0.36
CHMP4A-207ENST00000533523 PUM1Q14671 1186 aaKnown RBP eCLIP17.3■□□□□ 0.369e-8■□□□□ 9.5
CHMP4A-207ENST00000533523 UBXN2BQ14CS0 331 aa17.3■□□□□ 0.36
CHMP4A-207ENST00000533523 NAB2Q15742 525 aa17.3■□□□□ 0.36
CHMP4A-207ENST00000533523 MLF2Q15773 248 aaPredicted RBP17.3■□□□□ 0.36
CHMP4A-207ENST00000533523 RSPO4Q2I0M5 234 aaPredicted RBP17.3■□□□□ 0.36
CHMP4A-207ENST00000533523 DCAF4L1Q3SXM0 396 aa17.3■□□□□ 0.36
CHMP4A-207ENST00000533523 TTC38Q5R3I4 469 aa17.3■□□□□ 0.36
CHMP4A-207ENST00000533523 EEF1DP3Q658K8 133 aa17.3■□□□□ 0.36
CHMP4A-207ENST00000533523 LARP1BQ659C4 914 aaKnown RBP17.3■□□□□ 0.36
CHMP4A-207ENST00000533523 CATSPER3Q86XQ3 398 aa17.3■□□□□ 0.36
CHMP4A-207ENST00000533523 NACC1Q96RE7 527 aa17.3■□□□□ 0.36
CHMP4A-207ENST00000533523 KIFC3Q9BVG8 833 aa17.3■□□□□ 0.36
CHMP4A-207ENST00000533523 CHMP5Q9NZZ3 219 aa17.3■□□□□ 0.36
CHMP4A-207ENST00000533523 KANSL1LA0AUZ9 987 aa17.29■□□□□ 0.36
CHMP4A-207ENST00000533523 H3BQV1 296 aa17.29■□□□□ 0.36
CHMP4A-207ENST00000533523 SYT1P21579 422 aa17.29■□□□□ 0.36
CHMP4A-207ENST00000533523 U2AF2P26368 475 aaKnown RBP eCLIP17.29■□□□□ 0.36
CHMP4A-207ENST00000533523 OR1D2P34982 312 aa17.29■□□□□ 0.36
CHMP4A-207ENST00000533523 NAMPTP43490 491 aa17.29■□□□□ 0.36
CHMP4A-207ENST00000533523 PABPC1LQ4VXU2 614 aaKnown RBP17.29■□□□□ 0.36
CHMP4A-207ENST00000533523 PADI6Q6TGC4 694 aa17.29■□□□□ 0.36
CHMP4A-207ENST00000533523 NPAS3Q8IXF0 933 aa17.29■□□□□ 0.36
CHMP4A-207ENST00000533523 ERMNQ8TAM6 284 aa17.29■□□□□ 0.36
CHMP4A-207ENST00000533523 BCO2Q9BYV7 579 aa17.29■□□□□ 0.36
CHMP4A-207ENST00000533523 CCDC113Q9H0I3 377 aa17.29■□□□□ 0.36
CHMP4A-207ENST00000533523 SPATA6Q9NWH7 488 aaPredicted RBP17.29■□□□□ 0.36
CHMP4A-207ENST00000533523 ZFYVE26Q68DK2 2539 aa17.29■□□□□ 0.36
CHMP4A-207ENST00000533523 ACKR2O00590 384 aa17.28■□□□□ 0.36
CHMP4A-207ENST00000533523 KINO60870 393 aaKnown RBP17.28■□□□□ 0.36
CHMP4A-207ENST00000533523 B3GAT3O94766 335 aa17.28■□□□□ 0.36
CHMP4A-207ENST00000533523 OR52Z1P0C646 297 aa17.28■□□□□ 0.36
CHMP4A-207ENST00000533523 TKTP29401 623 aaKnown RBP17.28■□□□□ 0.36
CHMP4A-207ENST00000533523 PPP2R5AQ15172 486 aa17.28■□□□□ 0.36
CHMP4A-207ENST00000533523 IFT74Q96LB3 600 aa17.28■□□□□ 0.36
CHMP4A-207ENST00000533523 POLR3CQ9BUI4 534 aaPredicted RBP17.28■□□□□ 0.36
CHMP4A-207ENST00000533523 GOLGA2P5Q9HBQ8 144 aa17.28■□□□□ 0.36
CHMP4A-207ENST00000533523 MTRRQ9UBK8 725 aa17.28■□□□□ 0.36
CHMP4A-207ENST00000533523 CDY1Q9Y6F8 540 aa17.28■□□□□ 0.36
CHMP4A-207ENST00000533523 I3L4J1 428 aa17.27■□□□□ 0.36
CHMP4A-207ENST00000533523 LAMTOR5O43504 91 aa17.27■□□□□ 0.36
CHMP4A-207ENST00000533523 STX6O43752 255 aa17.27■□□□□ 0.36
CHMP4A-207ENST00000533523 POU2F2P09086 479 aa17.27■□□□□ 0.36
CHMP4A-207ENST00000533523 CYP11B2P19099 503 aa17.27■□□□□ 0.36
CHMP4A-207ENST00000533523 FGFR3P22607 806 aa17.27■□□□□ 0.36
CHMP4A-207ENST00000533523 NUCB2P80303 420 aa17.27■□□□□ 0.36
CHMP4A-207ENST00000533523 PFKPQ01813 784 aa17.27■□□□□ 0.36
CHMP4A-207ENST00000533523 PRKCQQ04759 706 aa17.27■□□□□ 0.36
CHMP4A-207ENST00000533523 PKP1Q13835 747 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms