RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 CLDN3O15551 220 aa16.89■□□□□ 0.29
CPSF1-211ENST00000533492 ZMYND10O75800 440 aa16.89■□□□□ 0.29
CPSF1-211ENST00000533492 FAM13AO94988 1023 aa16.89■□□□□ 0.29
CPSF1-211ENST00000533492 GRIN1Q05586 938 aa16.89■□□□□ 0.29
CPSF1-211ENST00000533492 KARSQ15046 597 aaKnown RBP16.89■□□□□ 0.29
CPSF1-211ENST00000533492 ZPBP2Q6X784 338 aa16.89■□□□□ 0.29
CPSF1-211ENST00000533492 HAUS6Q7Z4H7 955 aa16.89■□□□□ 0.29
CPSF1-211ENST00000533492 MYCT1Q8N699 235 aa16.89■□□□□ 0.29
CPSF1-211ENST00000533492 SNX27Q96L92 541 aa16.89■□□□□ 0.29
CPSF1-211ENST00000533492 REEP2Q9BRK0 252 aa16.89■□□□□ 0.29
CPSF1-211ENST00000533492 ZHX3Q9H4I2 956 aa16.89■□□□□ 0.29
CPSF1-211ENST00000533492 CLUHO75153 1309 aa16.89■□□□□ 0.29
CPSF1-211ENST00000533492 CITO14578 2027 aa16.88■□□□□ 0.29
CPSF1-211ENST00000533492 ABLIM1O14639 778 aa16.88■□□□□ 0.29
CPSF1-211ENST00000533492 KCNE1P15382 129 aa16.88■□□□□ 0.29
CPSF1-211ENST00000533492 PLCG1P19174 1290 aa16.88■□□□□ 0.29
CPSF1-211ENST00000533492 SYT1P21579 422 aa16.88■□□□□ 0.29
CPSF1-211ENST00000533492 FGFR3P22607 806 aa16.88■□□□□ 0.29
CPSF1-211ENST00000533492 OR1D2P34982 312 aa16.88■□□□□ 0.29
CPSF1-211ENST00000533492 SOX4Q06945 474 aaPredicted RBP16.88■□□□□ 0.29
CPSF1-211ENST00000533492 MCM6Q14566 821 aa16.88■□□□□ 0.29
CPSF1-211ENST00000533492 RAD54LQ92698 747 aa16.88■□□□□ 0.29
CPSF1-211ENST00000533492 ZNF707Q96C28 371 aaPredicted RBP16.88■□□□□ 0.29
CPSF1-211ENST00000533492 ZMAT2Q96NC0 199 aaKnown RBP16.88■□□□□ 0.29
CPSF1-211ENST00000533492 PRRX2Q99811 253 aa16.88■□□□□ 0.29
CPSF1-211ENST00000533492 PARVGQ9HBI0 331 aa16.88■□□□□ 0.29
CPSF1-211ENST00000533492 BLOC1S4Q9NUP1 217 aa16.88■□□□□ 0.29
CPSF1-211ENST00000533492 FBXW11Q9UKB1 542 aa16.88■□□□□ 0.29
CPSF1-211ENST00000533492 NUB1Q9Y5A7 615 aa16.88■□□□□ 0.29
CPSF1-211ENST00000533492 CLIC4Q9Y696 253 aa16.88■□□□□ 0.29
CPSF1-211ENST00000533492 ZNF318Q5VUA4 2279 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 DENND4AQ7Z401 1863 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 I3L4J1 428 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 PODXLO00592 558 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 C8AP07357 584 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 SCP2P22307 547 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 IGFBP6P24592 240 aaPredicted RBP16.87■□□□□ 0.29
CPSF1-211ENST00000533492 MARCKSP29966 332 aaPredicted RBP16.87■□□□□ 0.29
CPSF1-211ENST00000533492 RPL9P32969 192 aaKnown RBP16.87■□□□□ 0.29
CPSF1-211ENST00000533492 BRCC3P46736 316 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 LIG4P49917 911 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 NCKAP1LP55160 1127 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 TDGQ13569 410 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 RAB33AQ14088 237 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 SEZ6Q53EL9 994 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 PPM1LQ5SGD2 360 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 ANKS3Q6ZW76 656 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 LARP4BQ92615 738 aaKnown RBP16.87■□□□□ 0.29
CPSF1-211ENST00000533492 INTS4Q96HW7 963 aaKnown RBP16.87■□□□□ 0.29
CPSF1-211ENST00000533492 CCSER1Q9C0I3 900 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 SMOC2Q9H3U7 446 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 KCNK12Q9HB15 430 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 FOXD4L1Q9NU39 408 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 CNTN3Q9P232 1028 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 IGSF9Q9P2J2 1179 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 CCDC39Q9UFE4 941 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 CDY1Q9Y6F8 540 aa16.87■□□□□ 0.29
CPSF1-211ENST00000533492 ZDBF2Q9HCK1 2354 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 K7ENM7 598 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 ADAM12O43184 909 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 TRAK2O60296 914 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 TBCAO75347 108 aaKnown RBP16.86■□□□□ 0.29
CPSF1-211ENST00000533492 HNRNPA1P09651 372 aaKnown RBP eCLIP16.86■□□□□ 0.29
CPSF1-211ENST00000533492 TKTP29401 623 aaKnown RBP16.86■□□□□ 0.29
CPSF1-211ENST00000533492 AVPR2P30518 371 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 DDIT3P35638 169 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 CEBPZQ03701 1054 aaKnown RBP16.86■□□□□ 0.29
CPSF1-211ENST00000533492 MCL1Q07820 350 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 SLC10A6Q3KNW5 377 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 SPECC1Q5M775 1068 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 IER5LQ5T953 404 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 CD300LGQ6UXG3 332 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 C3orf58Q8NDZ4 430 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 LRRC15Q8TF66 581 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 C18orf25Q96B23 403 aaPredicted RBP16.86■□□□□ 0.29
CPSF1-211ENST00000533492 EPSTI1Q96J88 318 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 MFSD1Q9H3U5 465 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.86■□□□□ 0.29
CPSF1-211ENST00000533492 MTRRQ9UBK8 725 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 TBX20Q9UMR3 447 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 POLIQ9UNA4 740 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 BACE2Q9Y5Z0 518 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 VWA8A3KMH1 1905 aa16.86■□□□□ 0.29
CPSF1-211ENST00000533492 HNRNPDLO14979 420 aaKnown RBP16.85■□□□□ 0.29
CPSF1-211ENST00000533492 N4BP1O75113 896 aaKnown RBP16.85■□□□□ 0.29
CPSF1-211ENST00000533492 XYLBO75191 536 aa16.85■□□□□ 0.29
CPSF1-211ENST00000533492 PAPLNO95428 1278 aa16.85■□□□□ 0.29
CPSF1-211ENST00000533492 PDGFBP01127 241 aaPredicted RBP16.85■□□□□ 0.29
CPSF1-211ENST00000533492 CLTAP09496 248 aa16.85■□□□□ 0.29
CPSF1-211ENST00000533492 TXLNAP40222 546 aa16.85■□□□□ 0.29
CPSF1-211ENST00000533492 ZNF131P52739 623 aa16.85■□□□□ 0.29
CPSF1-211ENST00000533492 RESTQ13127 1097 aa16.85■□□□□ 0.29
CPSF1-211ENST00000533492 PTPAQ15257 358 aa16.85■□□□□ 0.29
CPSF1-211ENST00000533492 KYAT1Q16773 422 aa16.85■□□□□ 0.29
CPSF1-211ENST00000533492 UVSSAQ2YD98 709 aa16.85■□□□□ 0.29
CPSF1-211ENST00000533492 AXDND1Q5T1B0 1012 aaPredicted RBP16.85■□□□□ 0.29
CPSF1-211ENST00000533492 FAM173BQ6P4H8 233 aa16.85■□□□□ 0.29
CPSF1-211ENST00000533492 GET4Q7L5D6 327 aaPredicted RBP16.85■□□□□ 0.29
CPSF1-211ENST00000533492 KRI1Q8N9T8 703 aaKnown RBP16.85■□□□□ 0.29
CPSF1-211ENST00000533492 MYADMQ96S97 322 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms