RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 LOXL4Q96JB6 756 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 ZFP42Q96MM3 310 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 CEP89Q96ST8 783 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 GAD1Q99259 594 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 EDEM2Q9BV94 578 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 SCNM1Q9BWG6 230 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 LNPKQ9C0E8 428 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 BRD9Q9H8M2 597 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 NRBP2Q9NSY0 501 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 DNMT3BQ9UBC3 853 aaKnown RBP9.21□□□□□ -0.94
CD44-232ENST00000531118 ADAM28Q9UKQ2 775 aa9.21□□□□□ -0.94
CD44-232ENST00000531118 MRPS23Q9Y3D9 190 aaKnown RBP9.21□□□□□ -0.94
CD44-232ENST00000531118 SF3B1O75533 1304 aaKnown RBP eCLIP9.21□□□□□ -0.94
CD44-232ENST00000531118 NUP210Q8TEM1 1887 aaPredicted RBP9.21□□□□□ -0.94
CD44-232ENST00000531118 KIAA1549LQ6ZVL6 1849 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 TMEM150BA6NC51 233 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 ARL5CA6NH57 179 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 SH2B2O14492 632 aaPredicted RBP9.2□□□□□ -0.94
CD44-232ENST00000531118 CYP3A4P08684 503 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 ITGA4P13612 1032 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 MPLP40238 635 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 LRRC32Q14392 662 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 PSMD5Q16401 504 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 SOWAHCQ53LP3 525 aaPredicted RBP9.2□□□□□ -0.94
CD44-232ENST00000531118 DESI1Q6ICB0 168 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 TCEAL6Q6IPX3 200 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 NFXL1Q6ZNB6 911 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 KSR1Q8IVT5 923 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 CCDC82Q8N4S0 544 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 PIK3R5Q8WYR1 880 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 TCEAL3Q969E4 200 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 MCRS1Q96EZ8 462 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 CLSTN3Q9BQT9 956 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 COLEC11Q9BWP8 271 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 IFT122Q9HBG6 1241 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 UBN1Q9NPG3 1134 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 DISC1Q9NRI5 854 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 RBM12Q9NTZ6 932 aaKnown RBP9.2□□□□□ -0.94
CD44-232ENST00000531118 C2orf42Q9NWW7 574 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 GDE1Q9NZC3 331 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 SUCLA2Q9P2R7 463 aaPredicted RBP9.2□□□□□ -0.94
CD44-232ENST00000531118 IPPQ9Y573 584 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 LAMA1P25391 3075 aa9.2□□□□□ -0.94
CD44-232ENST00000531118 ATG2BQ96BY7 2078 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 CCDC69A6NI79 296 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 hCG_1984214I3L0E3 225 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 ADAM12O43184 909 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 CHMP2AO43633 222 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 RHOP08100 348 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 CALM1P0DP23 149 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 CALM2P0DP24 149 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 CALM3P0DP25 149 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 JUNDP17535 347 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 HOXA11P31270 313 aaPredicted RBP9.19□□□□□ -0.94
CD44-232ENST00000531118 HOXC13P31276 330 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 RAP1GAPP47736 663 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 DNM2P50570 870 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 MMP16P51512 607 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 WDR44Q5JSH3 913 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 SH3PXD2AQ5TCZ1 1133 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 JAKMIP3Q5VZ66 844 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 KIAA1211LQ6NV74 962 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 CASC1Q6TDU7 716 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 MICU3Q86XE3 530 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 MAP4K3Q8IVH8 894 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 ZNF713Q8N859 430 aaPredicted RBP9.19□□□□□ -0.94
CD44-232ENST00000531118 CNNM3Q8NE01 707 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 PRR7Q8TB68 274 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 GAB3Q8WWW8 586 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 IRF7Q92985 503 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 LENG9Q96B70 501 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 SH2D3AQ9BRG2 576 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 EIF2AQ9BY44 585 aaKnown RBP9.19□□□□□ -0.94
CD44-232ENST00000531118 MINDY3Q9H8M7 445 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 MIOSQ9NXC5 875 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 CACNG4Q9UBN1 327 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 PCDHGA5Q9Y5G8 931 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 COL4A3BPQ9Y5P4 624 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 NCANO14594 1321 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 ZMYM2Q9UBW7 1377 aa9.19□□□□□ -0.94
CD44-232ENST00000531118 PCNX2A6NKB5 2137 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 NRG2O14511 850 aaPredicted RBP9.18□□□□□ -0.94
CD44-232ENST00000531118 PRC1O43663 620 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 DXOO77932 396 aaKnown RBP9.18□□□□□ -0.94
CD44-232ENST00000531118 S1PR4O95977 384 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 CCNE1P24864 410 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 HOXA6P31267 233 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 JAK3P52333 1124 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 GRIK3Q13003 919 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 HSP90AA2PQ14568 343 aaPredicted RBP9.18□□□□□ -0.94
CD44-232ENST00000531118 PRR16Q569H4 304 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 XKR3Q5GH77 459 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 AXDND1Q5T1B0 1012 aaPredicted RBP9.18□□□□□ -0.94
CD44-232ENST00000531118 VITQ6UXI7 678 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 CACNA2D4Q7Z3S7 1137 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 KBTBD6Q86V97 674 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 PLEKHM2Q8IWE5 1019 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 HASPINQ8TF76 798 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 RABGGTAQ92696 567 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 MSANTD3Q96H12 275 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms