RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 FNBP1Q96RU3 617 aa22.7■■□□□ 1.23
VPS28-205ENST00000526204 PI4K2AQ9BTU6 479 aa22.7■■□□□ 1.23
VPS28-205ENST00000526204 POLR3FQ9H1D9 316 aaPredicted RBP22.7■■□□□ 1.23
VPS28-205ENST00000526204 ADAMTS5Q9UNA0 930 aa22.7■■□□□ 1.23
VPS28-205ENST00000526204 PTPN22Q9Y2R2 807 aa22.7■■□□□ 1.23
VPS28-205ENST00000526204 C5orf60A6NFR6 353 aa22.7■■□□□ 1.22
VPS28-205ENST00000526204 FSBPO95073 299 aa22.7■■□□□ 1.22
VPS28-205ENST00000526204 AGTP01019 485 aa22.7■■□□□ 1.22
VPS28-205ENST00000526204 PPP1R7Q15435 360 aa22.7■■□□□ 1.22
VPS28-205ENST00000526204 SGO2Q562F6 1265 aa22.7■■□□□ 1.22
VPS28-205ENST00000526204 TAS1R3Q7RTX0 852 aa22.7■■□□□ 1.22
VPS28-205ENST00000526204 CCDC60Q8IWA6 550 aaPredicted RBP22.7■■□□□ 1.22
VPS28-205ENST00000526204 KCNN1Q92952 543 aa22.7■■□□□ 1.22
VPS28-205ENST00000526204 EFCC1Q9HA90 598 aa22.7■■□□□ 1.22
VPS28-205ENST00000526204 LRRC4CQ9HCJ2 640 aa22.7■■□□□ 1.22
VPS28-205ENST00000526204 PICK1Q9NRD5 415 aa22.7■■□□□ 1.22
VPS28-205ENST00000526204 WHRNQ9P202 907 aa22.7■■□□□ 1.22
VPS28-205ENST00000526204 CLDN3O15551 220 aa22.69■■□□□ 1.22
VPS28-205ENST00000526204 DSG3P32926 999 aa22.69■■□□□ 1.22
VPS28-205ENST00000526204 STRN3Q13033 797 aa22.69■■□□□ 1.22
VPS28-205ENST00000526204 DRP2Q13474 957 aa22.69■■□□□ 1.22
VPS28-205ENST00000526204 ZACNQ401N2 412 aa22.69■■□□□ 1.22
VPS28-205ENST00000526204 ZNF516Q92618 1163 aa22.69■■□□□ 1.22
VPS28-205ENST00000526204 ZNF214Q9UL59 606 aaPredicted RBP22.69■■□□□ 1.22
VPS28-205ENST00000526204 STYXL1Q9Y6J8 313 aa22.69■■□□□ 1.22
VPS28-205ENST00000526204 SPATA31C2B4DYI2 1134 aa22.69■■□□□ 1.22
VPS28-205ENST00000526204 ATP2A1O14983 1001 aa22.69■■□□□ 1.22
VPS28-205ENST00000526204 RIPK2O43353 540 aa22.69■■□□□ 1.22
VPS28-205ENST00000526204 ERMARDQ5T6L9 678 aa22.69■■□□□ 1.22
VPS28-205ENST00000526204 TRMT10CQ7L0Y3 403 aaKnown RBP22.69■■□□□ 1.22
VPS28-205ENST00000526204 C12orf42Q96LP6 360 aa22.69■■□□□ 1.22
VPS28-205ENST00000526204 CEP89Q96ST8 783 aa22.69■■□□□ 1.22
VPS28-205ENST00000526204 DDX20Q9UHI6 824 aaKnown RBP22.69■■□□□ 1.22
VPS28-205ENST00000526204 ZNF112Q9UJU3 913 aa22.69■■□□□ 1.22
VPS28-205ENST00000526204 FER1L6Q2WGJ9 1857 aa22.68■■□□□ 1.22
VPS28-205ENST00000526204 MYPNQ86TC9 1320 aa22.68■■□□□ 1.22
VPS28-205ENST00000526204 TLDC2A0PJX2 215 aa22.68■■□□□ 1.22
VPS28-205ENST00000526204 MMP13P45452 471 aa22.68■■□□□ 1.22
VPS28-205ENST00000526204 NSFP46459 744 aaKnown RBP22.68■■□□□ 1.22
VPS28-205ENST00000526204 KCNJ1P48048 391 aa22.68■■□□□ 1.22
VPS28-205ENST00000526204 NBPF12Q5TAG4 269 aaPredicted RBP22.68■■□□□ 1.22
VPS28-205ENST00000526204 XPO6Q96QU8 1125 aaKnown RBP22.68■■□□□ 1.22
VPS28-205ENST00000526204 CYP39A1Q9NYL5 469 aa22.68■■□□□ 1.22
VPS28-205ENST00000526204 HACL1Q9UJ83 578 aa22.68■■□□□ 1.22
VPS28-205ENST00000526204 C19orf81C9J6K1 198 aa22.67■■□□□ 1.22
VPS28-205ENST00000526204 PTPRAP18433 802 aa22.67■■□□□ 1.22
VPS28-205ENST00000526204 TNNI1P19237 187 aa22.67■■□□□ 1.22
VPS28-205ENST00000526204 ITIH2P19823 946 aa22.67■■□□□ 1.22
VPS28-205ENST00000526204 CENPCQ03188 943 aa22.67■■□□□ 1.22
VPS28-205ENST00000526204 IFT88Q13099 833 aa22.67■■□□□ 1.22
VPS28-205ENST00000526204 RNF187Q5TA31 235 aaPredicted RBP22.67■■□□□ 1.22
VPS28-205ENST00000526204 SLFN12LQ6IEE8 588 aa22.67■■□□□ 1.22
VPS28-205ENST00000526204 TRIM72Q6ZMU5 477 aa22.67■■□□□ 1.22
VPS28-205ENST00000526204 DEFB132Q7Z7B7 95 aa22.67■■□□□ 1.22
VPS28-205ENST00000526204 SLC16A10Q8TF71 515 aa22.67■■□□□ 1.22
VPS28-205ENST00000526204 GRK7Q8WTQ7 553 aa22.67■■□□□ 1.22
VPS28-205ENST00000526204 ROPN1BQ9BZX4 212 aaPredicted RBP22.67■■□□□ 1.22
VPS28-205ENST00000526204 ROPN1Q9HAT0 212 aaPredicted RBP22.67■■□□□ 1.22
VPS28-205ENST00000526204 HLA-DRAP01903 254 aa22.67■■□□□ 1.22
VPS28-205ENST00000526204 C4BPAP04003 597 aaKnown RBP22.67■■□□□ 1.22
VPS28-205ENST00000526204 CYP1A1P04798 512 aaPredicted RBP22.67■■□□□ 1.22
VPS28-205ENST00000526204 SUPT20HL2P0C7V6 817 aa22.67■■□□□ 1.22
VPS28-205ENST00000526204 POLGP54098 1239 aaPredicted RBP22.67■■□□□ 1.22
VPS28-205ENST00000526204 PTP4A2Q12974 167 aa22.67■■□□□ 1.22
VPS28-205ENST00000526204 SUPT20HL1Q3ZLR7 823 aa22.67■■□□□ 1.22
VPS28-205ENST00000526204 GKAP1Q5VSY0 366 aaPredicted RBP22.67■■□□□ 1.22
VPS28-205ENST00000526204 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.67■■□□□ 1.22
VPS28-205ENST00000526204 TEX13BQ9BXU2 312 aa22.67■■□□□ 1.22
VPS28-205ENST00000526204 ACAD9Q9H845 621 aa22.67■■□□□ 1.22
VPS28-205ENST00000526204 AGO2Q9UKV8 859 aaKnown RBP22.67■■□□□ 1.22
VPS28-205ENST00000526204 MROH7Q68CQ1 1323 aa22.67■■□□□ 1.22
VPS28-205ENST00000526204 RRM1P23921 792 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 PIK3CAP42336 1068 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 SP4Q02446 784 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 EMC2Q15006 297 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 LIN9Q5TKA1 542 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 PPP1R2P3Q6NXS1 205 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 CPLX4Q7Z7G2 160 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 CACNA2D3Q8IZS8 1091 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 CPA5Q8WXQ8 436 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 ELMO3Q96BJ8 720 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 CHMP6Q96FZ7 201 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 AZI2Q9H6S1 392 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 HOMER3Q9NSC5 361 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 RASGRF2O14827 1237 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 LDHAP00338 332 aaKnown RBP22.66■■□□□ 1.22
VPS28-205ENST00000526204 POTEJP0CG39 1038 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 FGFR4P22455 802 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 TGFB2P61812 414 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 KRT17Q04695 432 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 TMEM132BQ14DG7 1078 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 MTERF2Q49AM1 385 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 MICALL2Q8IY33 904 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 C1orf54Q8WWF1 131 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 SEC16BQ96JE7 1060 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 VCPIP1Q96JH7 1222 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 CABS1Q96KC9 395 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 CAPN7Q9Y6W3 813 aa22.66■■□□□ 1.22
VPS28-205ENST00000526204 PIGRP01833 764 aa22.65■■□□□ 1.22
VPS28-205ENST00000526204 CAV1Q03135 178 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms