RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 PPM1LQ5SGD2 360 aa14.94□□□□□ -0.02
TCOF1-215ENST00000515516 ANKS3Q6ZW76 656 aa14.94□□□□□ -0.02
TCOF1-215ENST00000515516 HAUS6Q7Z4H7 955 aa14.94□□□□□ -0.02
TCOF1-215ENST00000515516 FEZF2Q8TBJ5 459 aa14.94□□□□□ -0.02
TCOF1-215ENST00000515516 RAD54LQ92698 747 aa14.94□□□□□ -0.02
TCOF1-215ENST00000515516 ZBTB45Q96K62 511 aaPredicted RBP14.94□□□□□ -0.02
TCOF1-215ENST00000515516 MFSD1Q9H3U5 465 aa14.94□□□□□ -0.02
TCOF1-215ENST00000515516 PARVGQ9HBI0 331 aa14.94□□□□□ -0.02
TCOF1-215ENST00000515516 GOLGA2P5Q9HBQ8 144 aa14.94□□□□□ -0.02
TCOF1-215ENST00000515516 IGSF9Q9P2J2 1179 aa14.94□□□□□ -0.02
TCOF1-215ENST00000515516 CCDC39Q9UFE4 941 aa14.94□□□□□ -0.02
TCOF1-215ENST00000515516 NUB1Q9Y5A7 615 aa14.94□□□□□ -0.02
TCOF1-215ENST00000515516 PODXLO00592 558 aa14.93□□□□□ -0.02
TCOF1-215ENST00000515516 XYLBO75191 536 aa14.93□□□□□ -0.02
TCOF1-215ENST00000515516 HNRNPA1P09651 372 aaKnown RBP eCLIP14.93□□□□□ -0.02
TCOF1-215ENST00000515516 FGFR3P22607 806 aa14.93□□□□□ -0.02
TCOF1-215ENST00000515516 ABCD1P33897 745 aa14.93□□□□□ -0.02
TCOF1-215ENST00000515516 OR1D2P34982 312 aa14.93□□□□□ -0.02
TCOF1-215ENST00000515516 TXLNAP40222 546 aa14.93□□□□□ -0.02
TCOF1-215ENST00000515516 LIG4P49917 911 aa14.93□□□□□ -0.02
TCOF1-215ENST00000515516 NCKAP1LP55160 1127 aa14.93□□□□□ -0.02
TCOF1-215ENST00000515516 MCL1Q07820 350 aa14.93□□□□□ -0.02
TCOF1-215ENST00000515516 TDGQ13569 410 aa14.93□□□□□ -0.02
TCOF1-215ENST00000515516 MCM6Q14566 821 aa14.93□□□□□ -0.02
TCOF1-215ENST00000515516 KARSQ15046 597 aaKnown RBP14.93□□□□□ -0.02
TCOF1-215ENST00000515516 ZNF707Q96C28 371 aaPredicted RBP14.93□□□□□ -0.02
TCOF1-215ENST00000515516 INTS4Q96HW7 963 aaKnown RBP14.93□□□□□ -0.02
TCOF1-215ENST00000515516 REEP2Q9BRK0 252 aa14.93□□□□□ -0.02
TCOF1-215ENST00000515516 BACH2Q9BYV9 841 aa14.93□□□□□ -0.02
TCOF1-215ENST00000515516 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.93□□□□□ -0.02
TCOF1-215ENST00000515516 CNTN3Q9P232 1028 aa14.93□□□□□ -0.02
TCOF1-215ENST00000515516 FBXW11Q9UKB1 542 aa14.93□□□□□ -0.02
TCOF1-215ENST00000515516 K7ENM7 598 aa14.92□□□□□ -0.02
TCOF1-215ENST00000515516 TRAK2O60296 914 aa14.92□□□□□ -0.02
TCOF1-215ENST00000515516 C8AP07357 584 aa14.92□□□□□ -0.02
TCOF1-215ENST00000515516 CLTAP09496 248 aa14.92□□□□□ -0.02
TCOF1-215ENST00000515516 SYT1P21579 422 aa14.92□□□□□ -0.02
TCOF1-215ENST00000515516 DDIT3P35638 169 aa14.92□□□□□ -0.02
TCOF1-215ENST00000515516 GRIN1Q05586 938 aa14.92□□□□□ -0.02
TCOF1-215ENST00000515516 RAB33AQ14088 237 aa14.92□□□□□ -0.02
TCOF1-215ENST00000515516 KRI1Q8N9T8 703 aaKnown RBP14.92□□□□□ -0.02
TCOF1-215ENST00000515516 LARP4BQ92615 738 aaKnown RBP14.92□□□□□ -0.02
TCOF1-215ENST00000515516 NXPE3Q969Y0 559 aa14.92□□□□□ -0.02
TCOF1-215ENST00000515516 ZMAT2Q96NC0 199 aaKnown RBP14.92□□□□□ -0.02
TCOF1-215ENST00000515516 CCSER1Q9C0I3 900 aa14.92□□□□□ -0.02
TCOF1-215ENST00000515516 PLEKHA5Q9HAU0 1116 aa14.92□□□□□ -0.02
TCOF1-215ENST00000515516 KCNK12Q9HB15 430 aa14.92□□□□□ -0.02
TCOF1-215ENST00000515516 MTRRQ9UBK8 725 aa14.92□□□□□ -0.02
TCOF1-215ENST00000515516 FBXL21Q9UKT6 434 aa14.92□□□□□ -0.02
TCOF1-215ENST00000515516 TBX20Q9UMR3 447 aa14.92□□□□□ -0.02
TCOF1-215ENST00000515516 POLIQ9UNA4 740 aa14.92□□□□□ -0.02
TCOF1-215ENST00000515516 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.92□□□□□ -0.02
TCOF1-215ENST00000515516 BACE2Q9Y5Z0 518 aa14.92□□□□□ -0.02
TCOF1-215ENST00000515516 CLIC4Q9Y696 253 aa14.92□□□□□ -0.02
TCOF1-215ENST00000515516 H7C4K7 107 aa14.91□□□□□ -0.02
TCOF1-215ENST00000515516 I3L4J1 428 aa14.91□□□□□ -0.02
TCOF1-215ENST00000515516 ABLIM1O14639 778 aa14.91□□□□□ -0.02
TCOF1-215ENST00000515516 HNRNPDLO14979 420 aaKnown RBP14.91□□□□□ -0.02
TCOF1-215ENST00000515516 FSHRP23945 695 aa14.91□□□□□ -0.02
TCOF1-215ENST00000515516 TKTP29401 623 aaKnown RBP14.91□□□□□ -0.02
TCOF1-215ENST00000515516 MARCKSP29966 332 aaPredicted RBP14.91□□□□□ -0.02
TCOF1-215ENST00000515516 AVPR2P30518 371 aa14.91□□□□□ -0.02
TCOF1-215ENST00000515516 HOXA9P31269 272 aa14.91□□□□□ -0.02
TCOF1-215ENST00000515516 ELF1P32519 619 aa14.91□□□□□ -0.02
TCOF1-215ENST00000515516 BRCC3P46736 316 aa14.91□□□□□ -0.02
TCOF1-215ENST00000515516 PTPN5P54829 565 aa14.91□□□□□ -0.02
TCOF1-215ENST00000515516 SOX4Q06945 474 aaPredicted RBP14.91□□□□□ -0.02
TCOF1-215ENST00000515516 UVSSAQ2YD98 709 aa14.91□□□□□ -0.02
TCOF1-215ENST00000515516 SLC10A6Q3KNW5 377 aa14.91□□□□□ -0.02
TCOF1-215ENST00000515516 SEZ6Q53EL9 994 aa14.91□□□□□ -0.02
TCOF1-215ENST00000515516 AXDND1Q5T1B0 1012 aaPredicted RBP14.91□□□□□ -0.02
TCOF1-215ENST00000515516 RTL10Q7L3V2 364 aa14.91□□□□□ -0.02
TCOF1-215ENST00000515516 GET4Q7L5D6 327 aaPredicted RBP14.91□□□□□ -0.02
TCOF1-215ENST00000515516 C18orf25Q96B23 403 aaPredicted RBP14.91□□□□□ -0.02
TCOF1-215ENST00000515516 SMOC2Q9H3U7 446 aa14.91□□□□□ -0.02
TCOF1-215ENST00000515516 FOXD4L1Q9NU39 408 aa14.91□□□□□ -0.02
TCOF1-215ENST00000515516 BLOC1S4Q9NUP1 217 aa14.91□□□□□ -0.02
TCOF1-215ENST00000515516 EPS15L1Q9UBC2 864 aa14.91□□□□□ -0.02
TCOF1-215ENST00000515516 SRPRBQ9Y5M8 271 aaKnown RBP14.91□□□□□ -0.02
TCOF1-215ENST00000515516 CDY1Q9Y6F8 540 aa14.91□□□□□ -0.02
TCOF1-215ENST00000515516 K7ELQ4 463 aaPredicted RBP14.9□□□□□ -0.02
TCOF1-215ENST00000515516 SYN3O14994 580 aa14.9□□□□□ -0.02
TCOF1-215ENST00000515516 ADAM12O43184 909 aa14.9□□□□□ -0.02
TCOF1-215ENST00000515516 XPOTO43592 962 aaKnown RBP14.9□□□□□ -0.02
TCOF1-215ENST00000515516 PAPLNO95428 1278 aa14.9□□□□□ -0.02
TCOF1-215ENST00000515516 MCM4P33991 863 aa14.9□□□□□ -0.02
TCOF1-215ENST00000515516 ZNF131P52739 623 aa14.9□□□□□ -0.02
TCOF1-215ENST00000515516 NHLH1Q02575 133 aa14.9□□□□□ -0.02
TCOF1-215ENST00000515516 CEBPZQ03701 1054 aaKnown RBP14.9□□□□□ -0.02
TCOF1-215ENST00000515516 PPP2R3AQ06190 1150 aa14.9□□□□□ -0.02
TCOF1-215ENST00000515516 RESTQ13127 1097 aa14.9□□□□□ -0.02
TCOF1-215ENST00000515516 SPECC1Q5M775 1068 aa14.9□□□□□ -0.02
TCOF1-215ENST00000515516 IER5LQ5T953 404 aa14.9□□□□□ -0.02
TCOF1-215ENST00000515516 RRAGBQ5VZM2 374 aa14.9□□□□□ -0.02
TCOF1-215ENST00000515516 GRASPQ7Z6J2 395 aaPredicted RBP14.9□□□□□ -0.02
TCOF1-215ENST00000515516 C3orf58Q8NDZ4 430 aa14.9□□□□□ -0.02
TCOF1-215ENST00000515516 APPL2Q8NEU8 664 aa14.9□□□□□ -0.02
TCOF1-215ENST00000515516 SLC7A14Q8TBB6 771 aa14.9□□□□□ -0.02
TCOF1-215ENST00000515516 KIF12Q96FN5 646 aa14.9□□□□□ -0.02
TCOF1-215ENST00000515516 EPSTI1Q96J88 318 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms