RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 GLRBP48167 497 aa6.38□□□□□ -1.39
NUP54-218ENST00000515460 GMPSP49915 693 aaPredicted RBP6.38□□□□□ -1.39
NUP54-218ENST00000515460 EPHB4P54760 987 aa6.38□□□□□ -1.39
NUP54-218ENST00000515460 MRPS5P82675 430 aaKnown RBP6.38□□□□□ -1.39
NUP54-218ENST00000515460 AIMP1Q12904 312 aaKnown RBP6.38□□□□□ -1.39
NUP54-218ENST00000515460 PAK1Q13153 545 aa6.38□□□□□ -1.39
NUP54-218ENST00000515460 BECN1Q14457 450 aa6.38□□□□□ -1.39
NUP54-218ENST00000515460 PAN2Q504Q3 1202 aaKnown RBP6.38□□□□□ -1.39
NUP54-218ENST00000515460 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.38□□□□□ -1.39
NUP54-218ENST00000515460 DEPDC7Q96QD5 511 aa6.38□□□□□ -1.39
NUP54-218ENST00000515460 TSPAN18Q96SJ8 248 aa6.38□□□□□ -1.39
NUP54-218ENST00000515460 IPPKQ9H8X2 491 aa6.38□□□□□ -1.39
NUP54-218ENST00000515460 CD248Q9HCU0 757 aa6.38□□□□□ -1.39
NUP54-218ENST00000515460 DLL4Q9NR61 685 aa6.38□□□□□ -1.39
NUP54-218ENST00000515460 THEGQ9P2T0 379 aa6.38□□□□□ -1.39
NUP54-218ENST00000515460 IBTKQ9P2D0 1353 aaPredicted RBP6.38□□□□□ -1.39
NUP54-218ENST00000515460 YDJCA8MPS7 323 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 FRAT2O75474 233 aaPredicted RBP6.37□□□□□ -1.39
NUP54-218ENST00000515460 RAD17O75943 681 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 LTFP02788 710 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 FAHP16930 419 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 MSNP26038 577 aaKnown RBP6.37□□□□□ -1.39
NUP54-218ENST00000515460 MCM5P33992 734 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 GABREP78334 506 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 RBL2Q08999 1139 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 CCDC173Q0VFZ6 552 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 TRDNQ13061 729 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 TCIRG1Q13488 830 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 KRT24Q2M2I5 525 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 SLFN13Q68D06 897 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 DPP8Q6V1X1 898 aaPredicted RBP6.37□□□□□ -1.39
NUP54-218ENST00000515460 KCTD1Q719H9 257 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 ZNF771Q7L3S4 317 aaPredicted RBP6.37□□□□□ -1.39
NUP54-218ENST00000515460 PROSER1Q86XN7 944 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 LURAP1LQ8IV03 231 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 MSL3Q8N5Y2 521 aaKnown RBP6.37□□□□□ -1.39
NUP54-218ENST00000515460 SUPT20HQ8NEM7 779 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 FEZ1Q99689 392 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 MED4Q9NPJ6 270 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 BABAM1Q9NWV8 329 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 TRAF6Q9Y4K3 522 aa6.37□□□□□ -1.39
NUP54-218ENST00000515460 ASH1LQ9NR48 2969 aaKnown RBP6.36□□□□□ -1.39
NUP54-218ENST00000515460 LAMB2P55268 1798 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 MYO15AQ9UKN7 3530 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 UBE2Q2LH0YL09 131 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 CHL1O00533 1208 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 GSTA4O15217 222 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 NKRFO15226 690 aaKnown RBP eCLIP6.36□□□□□ -1.39
NUP54-218ENST00000515460 FBXO21O94952 628 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 AMHP03971 560 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 COL6A1P12109 1028 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 TACR2P21452 398 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 TMPOP42166 694 aaKnown RBP6.36□□□□□ -1.39
NUP54-218ENST00000515460 TDO2P48775 406 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 GTF2A1P52655 376 aaPredicted RBP6.36□□□□□ -1.39
NUP54-218ENST00000515460 EPHA5P54756 1037 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 SERINC3Q13530 473 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 GRAPQ13588 217 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 TNIP1Q15025 636 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 FAM209AQ5JX71 171 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 EP400NLQ6ZTU2 488 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 ZFPM1Q8IX07 1006 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 FAM9BQ8IZU0 186 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 NLGN4XQ8N0W4 816 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 GRAPLQ8TC17 118 aaPredicted RBP6.36□□□□□ -1.39
NUP54-218ENST00000515460 CDK5RAP1Q96SZ6 601 aaKnown RBP6.36□□□□□ -1.39
NUP54-218ENST00000515460 DHRS4Q9BTZ2 278 aa6.36□□□□□ -1.39
NUP54-218ENST00000515460 TMX4Q9H1E5 349 aaPredicted RBP6.36□□□□□ -1.39
NUP54-218ENST00000515460 TRMT112Q9UI30 125 aaKnown RBP6.36□□□□□ -1.39
NUP54-218ENST00000515460 CNOT7Q9UIV1 285 aaKnown RBP6.36□□□□□ -1.39
NUP54-218ENST00000515460 FAM208BQ5VWN6 2430 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 LOC102724159A0A0B4J2E5 919 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 PSMD14O00487 310 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 PPP1R12AO14974 1030 aaPredicted RBP6.35□□□□□ -1.39
NUP54-218ENST00000515460 CTAGE5O15320 804 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 CHGBP05060 677 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 ENO2P09104 434 aaPredicted RBP6.35□□□□□ -1.39
NUP54-218ENST00000515460 GDF5P43026 501 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 TNNT3P45378 269 aaPredicted RBP6.35□□□□□ -1.39
NUP54-218ENST00000515460 HMGN5P82970 282 aaKnown RBP6.35□□□□□ -1.39
NUP54-218ENST00000515460 GUCY1A3Q02108 690 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 MYBPC2Q14324 1141 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 RASA3Q14644 834 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 PWP2Q15269 919 aaKnown RBP6.35□□□□□ -1.39
NUP54-218ENST00000515460 SF3B3Q15393 1217 aaKnown RBP6.35□□□□□ -1.39
NUP54-218ENST00000515460 SKIDA1Q1XH10 827 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 CT47A1Q5JQC4 288 aaPredicted RBP6.35□□□□□ -1.39
NUP54-218ENST00000515460 DDX46Q7L014 1031 aaKnown RBP6.35□□□□□ -1.39
NUP54-218ENST00000515460 GPR155Q7Z3F1 870 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 RPAINQ86UA6 219 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 Q8N1X5 172 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 STPG3Q8N7X2 389 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 DTX3Q8N9I9 347 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 DNERQ8NFT8 737 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 DPF2Q92785 391 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 CELF1Q92879 486 aaKnown RBP6.35□□□□□ -1.39
NUP54-218ENST00000515460 FBXW5Q969U6 566 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 FAM89AQ96GI7 184 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 WWC2-AS2Q96NR7 200 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 SORCS2Q96PQ0 1159 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms