RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 RPL9P32969 192 aaKnown RBP10.6□□□□□ -0.71
RNF4-221ENST00000513643 TNFSF9P41273 254 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 LIG4P49917 911 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 CLCN4P51793 760 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 CLCNKBP51801 687 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 YARSP54577 528 aaKnown RBP10.6□□□□□ -0.71
RNF4-221ENST00000513643 OSTNP61366 133 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 KRT85P78386 507 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 ALCAMQ13740 583 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 BMS1Q14692 1282 aaKnown RBP10.6□□□□□ -0.71
RNF4-221ENST00000513643 ENOX2Q16206 610 aaKnown RBP10.6□□□□□ -0.71
RNF4-221ENST00000513643 USP41Q3LFD5 358 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 SEZ6Q53EL9 994 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 HERC4Q5GLZ8 1057 aaPredicted RBP10.6□□□□□ -0.71
RNF4-221ENST00000513643 GLRA4Q5JXX5 417 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 SLFN12LQ6IEE8 588 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 LILRA6Q6PI73 481 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 GLIS3Q8NEA6 775 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 LNX1Q8TBB1 728 aaPredicted RBP10.6□□□□□ -0.71
RNF4-221ENST00000513643 RABGGTAQ92696 567 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 STAMQ92783 540 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 DDX27Q96GQ7 796 aaKnown RBP10.6□□□□□ -0.71
RNF4-221ENST00000513643 NECAB3Q96P71 396 aaPredicted RBP10.6□□□□□ -0.71
RNF4-221ENST00000513643 UHRF1Q96T88 793 aaPredicted RBP10.6□□□□□ -0.71
RNF4-221ENST00000513643 PYM1Q9BRP8 204 aaKnown RBP10.6□□□□□ -0.71
RNF4-221ENST00000513643 RHOBTB2Q9BYZ6 727 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 SCAND2PQ9GZW5 306 aaPredicted RBP10.6□□□□□ -0.71
RNF4-221ENST00000513643 MRPL44Q9H9J2 332 aaKnown RBP10.6□□□□□ -0.71
RNF4-221ENST00000513643 MRPL17Q9NRX2 175 aaKnown RBP10.6□□□□□ -0.71
RNF4-221ENST00000513643 SLC38A7Q9NVC3 462 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 PANK4Q9NVE7 773 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 PRKAG3Q9UGI9 489 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 SSX2IPQ9Y2D8 614 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 PCDHB13Q9Y5F0 798 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 ATP6V1DQ9Y5K8 247 aa10.6□□□□□ -0.71
RNF4-221ENST00000513643 SF3B1O75533 1304 aaKnown RBP eCLIP10.59□□□□□ -0.711e-6■■■■■ 109.1
RNF4-221ENST00000513643 TRIP11Q15643 1979 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 TDRD15B5MCY1 1934 aaKnown RBP10.59□□□□□ -0.71
RNF4-221ENST00000513643 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.59□□□□□ -0.71
RNF4-221ENST00000513643 PVALEFA0A1B0GWK0 134 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 LACTBL1A8MY62 500 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 TEX28O15482 410 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 KLRC4O43908 158 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 TBC1D4O60343 1298 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 TADA2AO75478 443 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 CXCL8P10145 99 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 MYBP10242 640 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 GLUD2P49448 558 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 AARSP49588 968 aaKnown RBP eCLIP10.59□□□□□ -0.71
RNF4-221ENST00000513643 NDUFV1P49821 464 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 NUCB2P80303 420 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 AMPD3Q01432 767 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 ZP2Q05996 745 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 MRPL58Q14197 206 aaKnown RBP10.59□□□□□ -0.71
RNF4-221ENST00000513643 RTP2Q5QGT7 225 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 UNC13DQ70J99 1090 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 PPFIBP1Q86W92 1011 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 CD302Q8IX05 232 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 CCDC65Q8IXS2 484 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 ZNF507Q8TCN5 953 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 PIK3R5Q8WYR1 880 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 CASP10Q92851 521 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 C18orf25Q96B23 403 aaPredicted RBP10.59□□□□□ -0.71
RNF4-221ENST00000513643 SPATA32Q96LK8 384 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 ACCSQ96QU6 501 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 ADAM7Q9H2U9 754 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 ZHX3Q9H4I2 956 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 GOLGA2P5Q9HBQ8 144 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 FAM13BQ9NYF5 915 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 ANKFY1Q9P2R3 1169 aa10.59□□□□□ -0.71
RNF4-221ENST00000513643 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.59□□□□□ -0.71
RNF4-221ENST00000513643 TCF20Q9UGU0 1960 aaKnown RBP10.59□□□□□ -0.71
RNF4-221ENST00000513643 A0A1B0GVL5 298 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 TNFRSF10AO00220 468 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 B3GAT3O94766 335 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 URODP06132 367 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 IDEP14735 1019 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 PFKFB1P16118 471 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 EPCAMP16422 314 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 GARTP22102 1010 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 ELAVL2Q12926 359 aaKnown RBP10.58□□□□□ -0.72
RNF4-221ENST00000513643 CUL4BQ13620 913 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 CBX2Q14781 532 aaPredicted RBP10.58□□□□□ -0.72
RNF4-221ENST00000513643 POSTNQ15063 836 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 BMT2Q1RMZ1 405 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 SPATA1Q5VX52 437 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.58□□□□□ -0.72
RNF4-221ENST00000513643 ADHFE1Q8IWW8 467 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 HDAC7Q8WUI4 952 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 TMEM174Q8WUU8 243 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 HPS3Q969F9 1004 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 BICD1Q96G01 975 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 PAGE5Q96GU1 130 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 B3GALT6Q96L58 329 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 CLSTN3Q9BQT9 956 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 TTPALQ9BTX7 342 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 MSTO1Q9BUK6 570 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 EMILIN2Q9BXX0 1053 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 ASB7Q9H672 318 aa10.58□□□□□ -0.72
RNF4-221ENST00000513643 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms