RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 SYT15Q9BQS2 421 aa16.37■□□□□ 0.21
SDF4-207ENST00000494748 AMNQ9BXJ7 453 aa16.37■□□□□ 0.21
SDF4-207ENST00000494748 UVRAGQ9P2Y5 699 aa16.37■□□□□ 0.21
SDF4-207ENST00000494748 FAM47DPA6NHR8 397 aa16.37■□□□□ 0.21
SDF4-207ENST00000494748 HIP1RO75146 1068 aa16.37■□□□□ 0.21
SDF4-207ENST00000494748 VAMP7P51809 220 aa16.37■□□□□ 0.21
SDF4-207ENST00000494748 RAD23BP54727 409 aa16.37■□□□□ 0.21
SDF4-207ENST00000494748 RASA3Q14644 834 aa16.37■□□□□ 0.21
SDF4-207ENST00000494748 ODR4Q5SWX8 454 aa16.37■□□□□ 0.21
SDF4-207ENST00000494748 SLFN13Q68D06 897 aa16.37■□□□□ 0.21
SDF4-207ENST00000494748 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.37■□□□□ 0.219e-7■■■■■ 51.2
SDF4-207ENST00000494748 SHC3Q92529 594 aa16.37■□□□□ 0.21
SDF4-207ENST00000494748 FAM136AQ96C01 138 aa16.37■□□□□ 0.21
SDF4-207ENST00000494748 ZNF653Q96CK0 615 aa16.37■□□□□ 0.21
SDF4-207ENST00000494748 GGA1Q9UJY5 639 aa16.37■□□□□ 0.21
SDF4-207ENST00000494748 ASB3Q9Y575 518 aa16.37■□□□□ 0.21
SDF4-207ENST00000494748 NRXN2Q9P2S2 1712 aa16.37■□□□□ 0.21
SDF4-207ENST00000494748 P4HA2O15460 535 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 FOSP01100 380 aaPredicted RBP16.36■□□□□ 0.21
SDF4-207ENST00000494748 RXRBP28702 533 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 EPHB2P29323 1055 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 CTCFP49711 727 aaPredicted RBP16.36■□□□□ 0.21
SDF4-207ENST00000494748 CTC1Q2NKJ3 1217 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 SEMA4DQ92854 862 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 ZBTB10Q96DT7 871 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 DENND2DQ9H6A0 471 aaPredicted RBP16.36■□□□□ 0.21
SDF4-207ENST00000494748 USH1CQ9Y6N9 552 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 LY75O60449 1722 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 ATP5HO75947 161 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 CAV1Q03135 178 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 TRIM68Q6AZZ1 485 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 SLC5A5Q92911 643 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 VTI1AQ96AJ9 217 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 C9orf72Q96LT7 481 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 TMEM117Q9H0C3 514 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 PCIF1Q9H4Z3 704 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 LRRC4BQ9NT99 713 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 NKIRAS1Q9NYS0 192 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 ANAPC5Q9UJX4 755 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 SLX4Q8IY92 1834 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 PRPF4O43172 522 aaKnown RBP eCLIP16.36■□□□□ 0.211e-6■□□□□ 10.2
SDF4-207ENST00000494748 EDF1O60869 148 aaKnown RBP16.36■□□□□ 0.21
SDF4-207ENST00000494748 PTDSS1P48651 473 aaKnown RBP16.36■□□□□ 0.21
SDF4-207ENST00000494748 NFIAQ12857 509 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 CRY2Q49AN0 593 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 DDX27Q96GQ7 796 aaKnown RBP16.36■□□□□ 0.21
SDF4-207ENST00000494748 SH3GL3Q99963 347 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 CBWD1Q9BRT8 395 aa16.36■□□□□ 0.21
SDF4-207ENST00000494748 IL9RQ01113 521 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 INTS8Q75QN2 995 aaKnown RBP16.35■□□□□ 0.21
SDF4-207ENST00000494748 ANKS1BQ7Z6G8 1248 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 LONP2Q86WA8 852 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 CNBD1Q8NA66 436 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 SH3TC2Q8TF17 1288 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 MIPEPQ99797 713 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 MROH7Q68CQ1 1323 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 ZNF646O15015 1829 aaPredicted RBP16.35■□□□□ 0.21
SDF4-207ENST00000494748 RASA4BC9J798 803 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 F5H6K3 240 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 ABLIM1O14639 778 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 RASA4O43374 803 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 CHMP2AO43633 222 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 AHCYL1O43865 530 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 SPAG7O75391 227 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 CBX6O95503 412 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 ABHD2P08910 425 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 ATF2P15336 505 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 CYP11B1P15538 503 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 ACADSP16219 412 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 KLRC2P26717 231 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 GTF2IP78347 998 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 STAT4Q14765 748 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 SGSM1Q2NKQ1 1148 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 CDC42EP5Q6NZY7 148 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 B3GNT9Q6UX72 402 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 FBXO11Q86XK2 927 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 IFT43Q96FT9 208 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 LRRC37BQ96QE4 947 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 NYAP2Q9P242 653 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 KDM4FA0A1W2PPD8 638 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 FAM196BA6NMK8 535 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 PMM2O15305 246 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 SLC18A1P54219 525 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 WASHC2DQ5SRD0 308 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 NUDCD1Q96RS6 583 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.35■□□□□ 0.211e-8■■■■■ 81.8
SDF4-207ENST00000494748 KANSL3Q9P2N6 904 aa16.35■□□□□ 0.21
SDF4-207ENST00000494748 ZNF536O15090 1300 aa16.34■□□□□ 0.21
SDF4-207ENST00000494748 PIK3CDO00329 1044 aa16.34■□□□□ 0.21
SDF4-207ENST00000494748 ENTPD5O75356 428 aa16.34■□□□□ 0.21
SDF4-207ENST00000494748 LMNB2Q03252 620 aa16.34■□□□□ 0.21
SDF4-207ENST00000494748 TMED2Q15363 201 aa16.34■□□□□ 0.21
SDF4-207ENST00000494748 PDK4Q16654 411 aa16.34■□□□□ 0.21
SDF4-207ENST00000494748 SPDYAQ5MJ70 313 aa16.34■□□□□ 0.21
SDF4-207ENST00000494748 C12orf56Q8IXR9 622 aa16.34■□□□□ 0.21
SDF4-207ENST00000494748 TOM1O60784 492 aa16.34■□□□□ 0.21
SDF4-207ENST00000494748 NPTXRO95502 500 aa16.34■□□□□ 0.21
SDF4-207ENST00000494748 CDR2Q01850 454 aa16.34■□□□□ 0.21
SDF4-207ENST00000494748 LBRQ14739 615 aaKnown RBP16.34■□□□□ 0.21
SDF4-207ENST00000494748 CERKQ8TCT0 537 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms