RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 ZNF516Q92618 1163 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 NT5C1BQ96P26 610 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 EPB41L4BQ9H329 900 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 CXorf56Q9H5V9 222 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 TMEM8AQ9HCN3 771 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 KCNK9Q9NPC2 374 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 L3MBTL1Q9Y468 752 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 ATP8B3O60423 1300 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 BHMG1C9JSJ3 638 aaPredicted RBP17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 P4HA2O15460 535 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 DRD4P21917 467 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 PDE6CP51160 858 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 TRPM4Q8TD43 1214 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 CPA5Q8WXQ8 436 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 CEP89Q96ST8 783 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 ABCF3Q9NUQ8 709 aa17.68■□□□□ 0.42
CCDC88B-210ENST00000494566 CFHP08603 1231 aa17.67■□□□□ 0.42
CCDC88B-210ENST00000494566 PARP9Q8IXQ6 854 aa17.67■□□□□ 0.42
CCDC88B-210ENST00000494566 N4BP2L2Q92802 583 aaPredicted RBP17.67■□□□□ 0.42
CCDC88B-210ENST00000494566 CYP26B1Q9NR63 512 aa17.67■□□□□ 0.42
CCDC88B-210ENST00000494566 INTS9Q9NV88 658 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-210ENST00000494566 CYP39A1Q9NYL5 469 aa17.67■□□□□ 0.42
CCDC88B-210ENST00000494566 SLC9A2Q9UBY0 812 aa17.67■□□□□ 0.42
CCDC88B-210ENST00000494566 PTPRJQ12913 1337 aa17.67■□□□□ 0.42
CCDC88B-210ENST00000494566 GOLGA6L10A0A0M3HER8 536 aa17.67■□□□□ 0.42
CCDC88B-210ENST00000494566 NLRP11P59045 1033 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-210ENST00000494566 LRIG3Q6UXM1 1119 aa17.67■□□□□ 0.42
CCDC88B-210ENST00000494566 PASD1Q8IV76 773 aa17.67■□□□□ 0.42
CCDC88B-210ENST00000494566 GIMAP7Q8NHV1 300 aa17.67■□□□□ 0.42
CCDC88B-210ENST00000494566 NSUN6Q8TEA1 469 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-210ENST00000494566 CHMP6Q96FZ7 201 aa17.67■□□□□ 0.42
CCDC88B-210ENST00000494566 IWS1Q96ST2 819 aa17.67■□□□□ 0.42
CCDC88B-210ENST00000494566 STK38LQ9Y2H1 464 aa17.67■□□□□ 0.42
CCDC88B-210ENST00000494566 ZNF541Q9H0D2 1346 aa17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 SCP2P22307 547 aa17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 PEX5P50542 639 aa17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 MTM1Q13496 603 aa17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 ACCSLQ4AC99 568 aa17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 CCDC137Q6PK04 289 aaKnown RBP17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 ZDHHC24Q6UX98 284 aa17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 UBL4BQ8N7F7 174 aa17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 PAIP2Q9BPZ3 127 aaKnown RBP17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 LBHD1Q9BQE6 289 aaPredicted RBP17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 TACO1Q9BSH4 297 aaKnown RBP17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 TRIM33Q9UPN9 1127 aa17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 MYH9P35579 1960 aaKnown RBP17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 DSG3P32926 999 aa17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 BIRC3Q13489 604 aa17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 MTMR3Q13615 1198 aa17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 SNCBQ16143 134 aa17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 GPD1LQ8N335 351 aa17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 PRCCQ92733 491 aaPredicted RBP17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 ATP6V0A1Q93050 837 aa17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 GPRASP2Q96D09 838 aa17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 HAPLN2Q9GZV7 340 aa17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 FAM114A2Q9NRY5 505 aa17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 ANKFY1Q9P2R3 1169 aa17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 TTC7AQ9ULT0 858 aaPredicted RBP17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 RGPD3A6NKT7 1758 aaPredicted RBP17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 RGPD4Q7Z3J3 1758 aa17.66■□□□□ 0.42
CCDC88B-210ENST00000494566 A8MUI8 341 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 SKAP2O75563 359 aaPredicted RBP17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 TNNI1P19237 187 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 BAG6P46379 1132 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 DUPD1Q68J44 220 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 EEPD1Q7L9B9 569 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 CNKSR2Q8WXI2 1034 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 DDX1Q92499 740 aaKnown RBP17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 KIFAP3Q92845 792 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 HEMGNQ9BXL5 484 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 PARP14Q460N5 1801 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 CLDN3O15551 220 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 RASSF9O75901 435 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 GH1P01241 217 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 PSAPP07602 524 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 ATP4AP20648 1035 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 LIG4P49917 911 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 GPC3P51654 580 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 CDR2Q01850 454 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 C11orf63Q6NUN7 778 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 EP400NLQ6ZTU2 488 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 FMNL3Q8IVF7 1028 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 VPS33BQ9H267 617 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 ZDHHC18Q9NUE0 388 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 MAP3K20Q9NYL2 800 aaKnown RBP17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 RLFQ13129 1914 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 LRRIQ4A6NIV6 560 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 KIAA0391O15091 583 aaKnown RBP17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 EDN1P05305 212 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 POLGP54098 1239 aaPredicted RBP17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 MFSD14AQ96MC6 490 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 RAB17Q9H0T7 212 aa17.65■□□□□ 0.42
CCDC88B-210ENST00000494566 O00370 1275 aa17.64■□□□□ 0.41
CCDC88B-210ENST00000494566 GRIN3BO60391 1043 aa17.64■□□□□ 0.41
CCDC88B-210ENST00000494566 PIAS1O75925 651 aa17.64■□□□□ 0.41
CCDC88B-210ENST00000494566 GJB6O95452 261 aa17.64■□□□□ 0.41
CCDC88B-210ENST00000494566 SEL1L2Q5TEA6 688 aa17.64■□□□□ 0.41
CCDC88B-210ENST00000494566 TAB3Q8N5C8 712 aaPredicted RBP17.64■□□□□ 0.41
CCDC88B-210ENST00000494566 CCDC197Q8NCU1 140 aa17.64■□□□□ 0.41
CCDC88B-210ENST00000494566 ASAP3Q8TDY4 903 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms