RNA–Protein interactions for RNA: ENST00000493618.5

ATG4B-223, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 5

Gene ATG4B, Length 899 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-223ENST00000493618 LRRC15Q8TF66 581 aa16.05■□□□□ 0.16
ATG4B-223ENST00000493618 STAMQ92783 540 aa16.05■□□□□ 0.16
ATG4B-223ENST00000493618 SNX27Q96L92 541 aa16.05■□□□□ 0.16
ATG4B-223ENST00000493618 ZMAT2Q96NC0 199 aaKnown RBP16.05■□□□□ 0.16
ATG4B-223ENST00000493618 ACAP3Q96P50 834 aa16.05■□□□□ 0.16
ATG4B-223ENST00000493618 TIPINQ9BVW5 301 aa16.05■□□□□ 0.16
ATG4B-223ENST00000493618 MFSD1Q9H3U5 465 aa16.05■□□□□ 0.16
ATG4B-223ENST00000493618 FAM86C1Q9NVL1 165 aa16.05■□□□□ 0.16
ATG4B-223ENST00000493618 ZDHHC7Q9NXF8 308 aa16.05■□□□□ 0.16
ATG4B-223ENST00000493618 RBM19Q9Y4C8 960 aaKnown RBP16.05■□□□□ 0.16
ATG4B-223ENST00000493618 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.05■□□□□ 0.16
ATG4B-223ENST00000493618 MEFVO15553 781 aaPredicted RBP16.04■□□□□ 0.16
ATG4B-223ENST00000493618 MAPTP10636 758 aaKnown RBP16.04■□□□□ 0.16
ATG4B-223ENST00000493618 FGFR3P22607 806 aa16.04■□□□□ 0.16
ATG4B-223ENST00000493618 OR1D2P34982 312 aa16.04■□□□□ 0.16
ATG4B-223ENST00000493618 MATR3P43243 847 aaKnown RBP eCLIP16.04■□□□□ 0.165e-10■■□□□ 12.9
ATG4B-223ENST00000493618 ARSHQ5FYA8 562 aa16.04■□□□□ 0.16
ATG4B-223ENST00000493618 PPM1LQ5SGD2 360 aa16.04■□□□□ 0.16
ATG4B-223ENST00000493618 LIN9Q5TKA1 542 aa16.04■□□□□ 0.16
ATG4B-223ENST00000493618 ARL6IP4Q66PJ3 421 aaKnown RBP16.04■□□□□ 0.16
ATG4B-223ENST00000493618 ALKAL1Q6UXT8 129 aa16.04■□□□□ 0.16
ATG4B-223ENST00000493618 CYP26C1Q6V0L0 522 aa16.04■□□□□ 0.16
ATG4B-223ENST00000493618 GRASPQ7Z6J2 395 aaPredicted RBP16.04■□□□□ 0.16
ATG4B-223ENST00000493618 TMEM105Q8N8V8 129 aa16.04■□□□□ 0.16
ATG4B-223ENST00000493618 TMEM161BQ8NDZ6 487 aa16.04■□□□□ 0.16
ATG4B-223ENST00000493618 C18orf25Q96B23 403 aaPredicted RBP16.04■□□□□ 0.16
ATG4B-223ENST00000493618 UROC1Q96N76 676 aa16.04■□□□□ 0.16
ATG4B-223ENST00000493618 C17orf75Q9HAS0 396 aa16.04■□□□□ 0.16
ATG4B-223ENST00000493618 TOPORSQ9NS56 1045 aaPredicted RBP16.04■□□□□ 0.16
ATG4B-223ENST00000493618 POLIQ9UNA4 740 aa16.04■□□□□ 0.16
ATG4B-223ENST00000493618 DUSP12Q9UNI6 340 aa16.04■□□□□ 0.16
ATG4B-223ENST00000493618 VPS37CA5D8V6 355 aaPredicted RBP16.03■□□□□ 0.16
ATG4B-223ENST00000493618 TMEM189-UBE2V1I3L0A0 370 aa16.03■□□□□ 0.16
ATG4B-223ENST00000493618 PODXLO00592 558 aa16.03■□□□□ 0.16
ATG4B-223ENST00000493618 C1RP00736 705 aa16.03■□□□□ 0.16
ATG4B-223ENST00000493618 C8AP07357 584 aa16.03■□□□□ 0.16
ATG4B-223ENST00000493618 CFHP08603 1231 aa16.03■□□□□ 0.16
ATG4B-223ENST00000493618 SMTNP53814 917 aa16.03■□□□□ 0.16
ATG4B-223ENST00000493618 XKR4Q5GH76 650 aa16.03■□□□□ 0.16
ATG4B-223ENST00000493618 GPBP1Q86WP2 473 aa16.03■□□□□ 0.16
ATG4B-223ENST00000493618 FLCNQ8NFG4 579 aa16.03■□□□□ 0.16
ATG4B-223ENST00000493618 SPIRE2Q8WWL2 714 aa16.03■□□□□ 0.16
ATG4B-223ENST00000493618 DDX27Q96GQ7 796 aaKnown RBP16.03■□□□□ 0.16
ATG4B-223ENST00000493618 RHOBTB2Q9BYZ6 727 aa16.03■□□□□ 0.16
ATG4B-223ENST00000493618 HAPLN2Q9GZV7 340 aa16.03■□□□□ 0.16
ATG4B-223ENST00000493618 MTRRQ9UBK8 725 aa16.03■□□□□ 0.16
ATG4B-223ENST00000493618 FBXL21Q9UKT6 434 aa16.03■□□□□ 0.16
ATG4B-223ENST00000493618 CDY1Q9Y6F8 540 aa16.03■□□□□ 0.16
ATG4B-223ENST00000493618 PAPLNO95428 1278 aa16.02■□□□□ 0.16
ATG4B-223ENST00000493618 FSHRP23945 695 aa16.02■□□□□ 0.16
ATG4B-223ENST00000493618 UBA7P41226 1012 aa16.02■□□□□ 0.16
ATG4B-223ENST00000493618 SPAG1Q07617 926 aa16.02■□□□□ 0.16
ATG4B-223ENST00000493618 MCM6Q14566 821 aa16.02■□□□□ 0.16
ATG4B-223ENST00000493618 NOLC1Q14978 699 aaKnown RBP eCLIP16.02■□□□□ 0.16
ATG4B-223ENST00000493618 KARSQ15046 597 aaKnown RBP16.02■□□□□ 0.16
ATG4B-223ENST00000493618 SF3A1Q15459 793 aaKnown RBP16.02■□□□□ 0.16
ATG4B-223ENST00000493618 AXDND1Q5T1B0 1012 aaPredicted RBP16.02■□□□□ 0.16
ATG4B-223ENST00000493618 PDXDC1Q6P996 788 aa16.02■□□□□ 0.16
ATG4B-223ENST00000493618 RASSF8Q8NHQ8 419 aa16.02■□□□□ 0.16
ATG4B-223ENST00000493618 SLC7A14Q8TBB6 771 aa16.02■□□□□ 0.16
ATG4B-223ENST00000493618 BICD1Q96G01 975 aa16.02■□□□□ 0.16
ATG4B-223ENST00000493618 CALML4Q96GE6 196 aa16.02■□□□□ 0.16
ATG4B-223ENST00000493618 PRRX2Q99811 253 aa16.02■□□□□ 0.16
ATG4B-223ENST00000493618 REEP2Q9BRK0 252 aa16.02■□□□□ 0.16
ATG4B-223ENST00000493618 NTPCRQ9BSD7 190 aaKnown RBP16.02■□□□□ 0.16
ATG4B-223ENST00000493618 SLC38A7Q9NVC3 462 aa16.02■□□□□ 0.16
ATG4B-223ENST00000493618 CNTN3Q9P232 1028 aa16.02■□□□□ 0.16
ATG4B-223ENST00000493618 IGSF9Q9P2J2 1179 aa16.02■□□□□ 0.16
ATG4B-223ENST00000493618 EPS15L1Q9UBC2 864 aa16.02■□□□□ 0.16
ATG4B-223ENST00000493618 ZDBF2Q9HCK1 2354 aa16.02■□□□□ 0.15
ATG4B-223ENST00000493618 H0Y858 1186 aa16.01■□□□□ 0.15
ATG4B-223ENST00000493618 TOM1L1O75674 476 aa16.01■□□□□ 0.15
ATG4B-223ENST00000493618 LAMP2P13473 410 aa16.01■□□□□ 0.15
ATG4B-223ENST00000493618 KCNE1P15382 129 aa16.01■□□□□ 0.15
ATG4B-223ENST00000493618 PLCG1P19174 1290 aa16.01■□□□□ 0.15
ATG4B-223ENST00000493618 NCKAP1LP55160 1127 aa16.01■□□□□ 0.15
ATG4B-223ENST00000493618 ARPP19P56211 112 aa16.01■□□□□ 0.15
ATG4B-223ENST00000493618 RAB33AQ14088 237 aa16.01■□□□□ 0.15
ATG4B-223ENST00000493618 SLC10A6Q3KNW5 377 aa16.01■□□□□ 0.15
ATG4B-223ENST00000493618 CWF19L1Q69YN2 538 aaKnown RBP16.01■□□□□ 0.15
ATG4B-223ENST00000493618 ASTLQ6HA08 431 aaPredicted RBP16.01■□□□□ 0.15
ATG4B-223ENST00000493618 SIX5Q8N196 739 aa16.01■□□□□ 0.15
ATG4B-223ENST00000493618 AK8Q96MA6 479 aa16.01■□□□□ 0.15
ATG4B-223ENST00000493618 ZHX3Q9H4I2 956 aa16.01■□□□□ 0.15
ATG4B-223ENST00000493618 BLOC1S4Q9NUP1 217 aa16.01■□□□□ 0.15
ATG4B-223ENST00000493618 HCFC1R1Q9NWW0 138 aa16.01■□□□□ 0.15
ATG4B-223ENST00000493618 TUBGCP4Q9UGJ1 667 aa16.01■□□□□ 0.15
ATG4B-223ENST00000493618 TCHHQ07283 1943 aa16.01■□□□□ 0.15
ATG4B-223ENST00000493618 COL4A3Q01955 1670 aa16.01■□□□□ 0.15
ATG4B-223ENST00000493618 TRAPPC3O43617 180 aa16■□□□□ 0.15
ATG4B-223ENST00000493618 KRT18P05783 430 aaKnown RBP16■□□□□ 0.15
ATG4B-223ENST00000493618 HNRNPA1P09651 372 aaKnown RBP eCLIP16■□□□□ 0.15
ATG4B-223ENST00000493618 CXCL8P10145 99 aa16■□□□□ 0.15
ATG4B-223ENST00000493618 NPR3P17342 541 aa16■□□□□ 0.15
ATG4B-223ENST00000493618 TNFSF9P41273 254 aa16■□□□□ 0.15
ATG4B-223ENST00000493618 SPECC1Q5M775 1068 aa16■□□□□ 0.15
ATG4B-223ENST00000493618 VARS2Q5ST30 1063 aaKnown RBP16■□□□□ 0.15
ATG4B-223ENST00000493618 HAUS6Q7Z4H7 955 aa16■□□□□ 0.15
ATG4B-223ENST00000493618 BRAPQ7Z569 592 aa16■□□□□ 0.15
ATG4B-223ENST00000493618 SLC44A3Q8N4M1 653 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms