RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 CAGE1Q8TC20 777 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 ZNF516Q92618 1163 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 FAM84AQ96KN4 292 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 JPH2Q9BR39 696 aaPredicted RBP13.12□□□□□ -0.31
HDAC6-230ENST00000488543 SYT11Q9BT88 431 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 IFT122Q9HBG6 1241 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 KIAA1586Q9HCI6 787 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 SALL4Q9UJQ4 1053 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 A0A087WZ62 844 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 MAGEB2O15479 319 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 EVI5O60447 810 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 ERLIN1O75477 346 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 CXCR5P32302 372 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 C1QTNF8P60827 252 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 KCNA10Q16322 511 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 ZSCAN26Q16670 478 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 SKIDA1Q1XH10 827 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 KRT39Q6A163 491 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 SLFN12LQ6IEE8 588 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 ZPBP2Q6X784 338 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 RUFY4Q6ZNE9 571 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 CDR2LQ86X02 465 aaPredicted RBP13.11□□□□□ -0.31
HDAC6-230ENST00000488543 PXYLP1Q8TE99 480 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 HNRNPLLQ8WVV9 542 aaKnown RBP13.11□□□□□ -0.31
HDAC6-230ENST00000488543 FDXACB1Q9BRP7 624 aaPredicted RBP13.11□□□□□ -0.31
HDAC6-230ENST00000488543 ADAMTS1Q9UHI8 967 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 GINS2Q9Y248 185 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 SAR1BQ9Y6B6 198 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 CAPN6Q9Y6Q1 641 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 TRIP12Q14669 1992 aaPredicted RBP13.11□□□□□ -0.31
HDAC6-230ENST00000488543 ABLIM1O14639 778 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 ASGR1P07306 291 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 ANXA13P27216 316 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 GRK4P32298 578 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 MATR3P43243 847 aaKnown RBP eCLIP13.11□□□□□ -0.31
HDAC6-230ENST00000488543 ACOT2P49753 483 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 CETN1Q12798 172 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 ARHGAP44Q17R89 818 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 TXLNBQ8N3L3 684 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 TAS1R2Q8TE23 839 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 KAT5Q92993 513 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.11□□□□□ -0.31
HDAC6-230ENST00000488543 CDHR5Q9HBB8 845 aa13.11□□□□□ -0.31
HDAC6-230ENST00000488543 UBE2TQ9NPD8 197 aaPredicted RBP13.11□□□□□ -0.31
HDAC6-230ENST00000488543 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.11□□□□□ -0.31
HDAC6-230ENST00000488543 CASP8AP2Q9UKL3 1982 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 COL1A2P08123 1366 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 PTPRJQ12913 1337 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 NRCAMQ92823 1304 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 INO80B-WBP1J3KQ70 363 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 FOXN3O00409 490 aaPredicted RBP13.1□□□□□ -0.31
HDAC6-230ENST00000488543 DDX3XO00571 662 aaKnown RBP eCLIP13.1□□□□□ -0.31
HDAC6-230ENST00000488543 B4GALT5O43286 388 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 NCK2O43639 380 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 FAM189A1O60320 539 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 MOCS3O95396 460 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 PRKCBP05771 671 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 DNA2P51530 1060 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 GPC3P51654 580 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 SEZ6Q53EL9 994 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 SV2AQ7L0J3 742 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 ZBTB8OSQ8IWT0 167 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 LNX1Q8TBB1 728 aaPredicted RBP13.1□□□□□ -0.31
HDAC6-230ENST00000488543 SECISBP2LQ93073 1101 aaKnown RBP13.1□□□□□ -0.31
HDAC6-230ENST00000488543 KREMEN1Q96MU8 473 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 ACO2Q99798 780 aaKnown RBP13.1□□□□□ -0.31
HDAC6-230ENST00000488543 MSTO1Q9BUK6 570 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 PACSIN1Q9BY11 444 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 INO80BQ9C086 356 aaPredicted RBP13.1□□□□□ -0.31
HDAC6-230ENST00000488543 UPF3AQ9H1J1 476 aaKnown RBP13.1□□□□□ -0.31
HDAC6-230ENST00000488543 SPC25Q9HBM1 224 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 WBP1LQ9NX94 342 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 ANKFY1Q9P2R3 1169 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 ANK1P16157 1881 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 ANKRD65E5RJM6 399 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 GNRH1P01148 92 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 DLATP10515 647 aaKnown RBP13.1□□□□□ -0.31
HDAC6-230ENST00000488543 TMOD1P28289 359 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 ADAM17P78536 824 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 KIZQ2M2Z5 673 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 NBPF20Q3BBV1 942 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 TAF3Q5VWG9 929 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 C7orf31Q8N865 590 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 SLC30A5Q8TAD4 765 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 HDAC7Q8WUI4 952 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 MRPL4Q9BYD3 311 aaKnown RBP13.1□□□□□ -0.31
HDAC6-230ENST00000488543 C2orf40Q9H1Z8 148 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 FZD8Q9H461 694 aa13.1□□□□□ -0.31
HDAC6-230ENST00000488543 DDX20Q9UHI6 824 aaKnown RBP13.1□□□□□ -0.31
HDAC6-230ENST00000488543 THSD7BQ9C0I4 1608 aa13.09□□□□□ -0.31
HDAC6-230ENST00000488543 CNTNAP2Q9UHC6 1331 aa13.09□□□□□ -0.31
HDAC6-230ENST00000488543 FGFR4P22455 802 aa13.09□□□□□ -0.31
HDAC6-230ENST00000488543 PTENP60484 403 aa13.09□□□□□ -0.31
HDAC6-230ENST00000488543 CCSAPQ6IQ19 270 aaPredicted RBP13.09□□□□□ -0.31
HDAC6-230ENST00000488543 DNAJC5GQ8N7S2 189 aa13.09□□□□□ -0.31
HDAC6-230ENST00000488543 FBXL13Q8NEE6 735 aa13.09□□□□□ -0.31
HDAC6-230ENST00000488543 HELQQ8TDG4 1101 aa13.09□□□□□ -0.31
HDAC6-230ENST00000488543 COG1Q8WTW3 980 aa13.09□□□□□ -0.31
HDAC6-230ENST00000488543 DNAJB3Q8WWF6 145 aa13.09□□□□□ -0.31
HDAC6-230ENST00000488543 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms