RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 BMPR1AP36894 532 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 ZEB1P37275 1124 aaPredicted RBP5.32□□□□□ -1.56
VPS41-213ENST00000485955 ATP8B2P98198 1209 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 ITKQ08881 620 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 MTM1Q13496 603 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 PCBP2Q15366 365 aaKnown RBP eCLIP5.32□□□□□ -1.56
VPS41-213ENST00000485955 ABCB5Q2M3G0 1257 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 KRTAP15-1Q3LI76 137 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 GJC2Q5T442 439 aaPredicted RBP5.32□□□□□ -1.56
VPS41-213ENST00000485955 ZNF529Q6P280 563 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 UBE3BQ7Z3V4 1068 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 ARHGEF19Q8IW93 802 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 RHOT2Q8IXI1 618 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 OR56A1Q8NGH5 318 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 CASKIN2Q8WXE0 1202 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 SERHL2Q9H4I8 314 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 TMEM140Q9NV12 185 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 KLHL11Q9NVR0 708 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 FAM30AQ9NZY2 134 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 RUVBL1Q9Y265 456 aaKnown RBP5.32□□□□□ -1.56
VPS41-213ENST00000485955 MYBBP1AQ9BQG0 1328 aaKnown RBP5.31□□□□□ -1.56
VPS41-213ENST00000485955 TMEM191CA6NGB0 347 aa5.31□□□□□ -1.56
VPS41-213ENST00000485955 MARCH11A6NNE9 402 aa5.31□□□□□ -1.56
VPS41-213ENST00000485955 GPR32O75388 356 aa5.31□□□□□ -1.56
VPS41-213ENST00000485955 POMCP01189 267 aa5.31□□□□□ -1.56
VPS41-213ENST00000485955 CFIP05156 583 aa5.31□□□□□ -1.56
VPS41-213ENST00000485955 MYBL2P10244 700 aa5.31□□□□□ -1.56
VPS41-213ENST00000485955 DDCP20711 480 aa5.31□□□□□ -1.56
VPS41-213ENST00000485955 WASP42768 502 aa5.31□□□□□ -1.56
VPS41-213ENST00000485955 RESTQ13127 1097 aa5.31□□□□□ -1.56
VPS41-213ENST00000485955 ACAP2Q15057 778 aa5.31□□□□□ -1.56
VPS41-213ENST00000485955 SEM1Q6ZVN7 128 aa5.31□□□□□ -1.56
VPS41-213ENST00000485955 RHOT1Q8IXI2 618 aa5.31□□□□□ -1.56
VPS41-213ENST00000485955 RAB24Q969Q5 203 aa5.31□□□□□ -1.56
VPS41-213ENST00000485955 CYFIP2Q96F07 1278 aa5.31□□□□□ -1.56
VPS41-213ENST00000485955 ZSWIM1Q9BR11 485 aa5.31□□□□□ -1.56
VPS41-213ENST00000485955 C11orf21Q9P2W6 132 aa5.31□□□□□ -1.56
VPS41-213ENST00000485955 ATP11BQ9Y2G3 1177 aa5.31□□□□□ -1.56
VPS41-213ENST00000485955 PCDHA13Q9Y5I0 950 aa5.31□□□□□ -1.56
VPS41-213ENST00000485955 FPGT-TNNI3KV9GXZ4 949 aa5.31□□□□□ -1.56
VPS41-213ENST00000485955 AATKQ6ZMQ8 1374 aa5.3□□□□□ -1.56
VPS41-213ENST00000485955 WASHC2CQ9Y4E1 1318 aa5.3□□□□□ -1.56
VPS41-213ENST00000485955 TCRBV7S2A1N4TA0A589 114 aa5.3□□□□□ -1.56
VPS41-213ENST00000485955 KLHL33A6NCF5 533 aa5.3□□□□□ -1.56
VPS41-213ENST00000485955 FAM171A2A8MVW0 826 aa5.3□□□□□ -1.56
VPS41-213ENST00000485955 PPFIA4O75335 1185 aa5.3□□□□□ -1.56
VPS41-213ENST00000485955 GCP02774 474 aa5.3□□□□□ -1.56
VPS41-213ENST00000485955 EDNRBP24530 442 aa5.3□□□□□ -1.56
VPS41-213ENST00000485955 DDX6P26196 483 aaKnown RBP eCLIP5.3□□□□□ -1.56
VPS41-213ENST00000485955 TP53BP2Q13625 1128 aa5.3□□□□□ -1.56
VPS41-213ENST00000485955 B3GNTL1Q67FW5 361 aaPredicted RBP5.3□□□□□ -1.56
VPS41-213ENST00000485955 MAPKAPK5Q8IW41 473 aa5.3□□□□□ -1.56
VPS41-213ENST00000485955 BEND2Q8NDZ0 799 aa5.3□□□□□ -1.56
VPS41-213ENST00000485955 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.3□□□□□ -1.56
VPS41-213ENST00000485955 MTMR8Q96EF0 704 aa5.3□□□□□ -1.56
VPS41-213ENST00000485955 FUBP3Q96I24 572 aaKnown RBP eCLIP5.3□□□□□ -1.56
VPS41-213ENST00000485955 C7orf25Q9BPX7 421 aa5.3□□□□□ -1.56
VPS41-213ENST00000485955 LIMCH1Q9UPQ0 1083 aa5.3□□□□□ -1.56
VPS41-213ENST00000485955 TNKSO95271 1327 aa5.29□□□□□ -1.56
VPS41-213ENST00000485955 A0A1B0GTW7 788 aa5.29□□□□□ -1.56
VPS41-213ENST00000485955 B3GALT2O43825 422 aa5.29□□□□□ -1.56
VPS41-213ENST00000485955 SPDEFO95238 335 aa5.29□□□□□ -1.56
VPS41-213ENST00000485955 OCA2Q04671 838 aa5.29□□□□□ -1.56
VPS41-213ENST00000485955 TARDBPQ13148 414 aaKnown RBP eCLIP5.29□□□□□ -1.56
VPS41-213ENST00000485955 ODF1Q14990 250 aa5.29□□□□□ -1.56
VPS41-213ENST00000485955 Q6YL49 198 aa5.29□□□□□ -1.56
VPS41-213ENST00000485955 DRC7Q8IY82 874 aa5.29□□□□□ -1.56
VPS41-213ENST00000485955 TMEM132CQ8N3T6 1108 aa5.29□□□□□ -1.56
VPS41-213ENST00000485955 DCBLD1Q8N8Z6 715 aa5.29□□□□□ -1.56
VPS41-213ENST00000485955 SSH1Q8WYL5 1049 aa5.29□□□□□ -1.56
VPS41-213ENST00000485955 GSTO2Q9H4Y5 243 aa5.29□□□□□ -1.56
VPS41-213ENST00000485955 MANSC1Q9H8J5 431 aa5.29□□□□□ -1.56
VPS41-213ENST00000485955 PACSIN3Q9UKS6 424 aa5.29□□□□□ -1.56
VPS41-213ENST00000485955 IPPQ9Y573 584 aa5.29□□□□□ -1.56
VPS41-213ENST00000485955 OVOL3O00110 214 aa5.28□□□□□ -1.56
VPS41-213ENST00000485955 XPOTO43592 962 aaKnown RBP5.28□□□□□ -1.56
VPS41-213ENST00000485955 SPATA31D3P0C874 917 aa5.28□□□□□ -1.56
VPS41-213ENST00000485955 GCSHP23434 173 aa5.28□□□□□ -1.56
VPS41-213ENST00000485955 GUCY1B3Q02153 619 aa5.28□□□□□ -1.56
VPS41-213ENST00000485955 SCAPQ12770 1279 aa5.28□□□□□ -1.56
VPS41-213ENST00000485955 IL10RAQ13651 578 aa5.28□□□□□ -1.56
VPS41-213ENST00000485955 C3orf36Q3SXR2 165 aa5.28□□□□□ -1.56
VPS41-213ENST00000485955 SPATA31D4Q6ZUB0 917 aa5.28□□□□□ -1.56
VPS41-213ENST00000485955 CMTR2Q8IYT2 770 aaKnown RBP5.28□□□□□ -1.56
VPS41-213ENST00000485955 ASB10Q8WXI3 467 aa5.28□□□□□ -1.56
VPS41-213ENST00000485955 NACC2Q96BF6 587 aa5.28□□□□□ -1.56
VPS41-213ENST00000485955 TEKT5Q96M29 485 aa5.28□□□□□ -1.56
VPS41-213ENST00000485955 SYBUQ9NX95 663 aa5.28□□□□□ -1.56
VPS41-213ENST00000485955 SERPINB13Q9UIV8 391 aa5.28□□□□□ -1.56
VPS41-213ENST00000485955 EPN1Q9Y6I3 576 aaPredicted RBP5.28□□□□□ -1.56
VPS41-213ENST00000485955 SHTN1A0MZ66 631 aa5.27□□□□□ -1.57
VPS41-213ENST00000485955 PIPSLA2A3N6 862 aa5.27□□□□□ -1.57
VPS41-213ENST00000485955 TEX33O43247 280 aa5.27□□□□□ -1.57
VPS41-213ENST00000485955 HTRA2O43464 458 aaPredicted RBP5.27□□□□□ -1.57
VPS41-213ENST00000485955 HLA-DOAP06340 250 aa5.27□□□□□ -1.57
VPS41-213ENST00000485955 SBK3P0C264 359 aa5.27□□□□□ -1.57
VPS41-213ENST00000485955 CKBP12277 381 aa5.27□□□□□ -1.57
VPS41-213ENST00000485955 FGFR4P22455 802 aa5.27□□□□□ -1.57
VPS41-213ENST00000485955 SLC6A4P31645 630 aa5.27□□□□□ -1.57
VPS41-213ENST00000485955 INHBEP58166 350 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms