RNA–Protein interactions for RNA: ENST00000481641.1

CLK1-211, Transcript of CDC like kinase 1, humanhuman

TSL 4

Gene CLK1, Length 690 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-211ENST00000481641 GET4Q7L5D6 327 aaPredicted RBP20.34■□□□□ 0.85
CLK1-211ENST00000481641 TMEM105Q8N8V8 129 aa20.34■□□□□ 0.85
CLK1-211ENST00000481641 TMEM161BQ8NDZ6 487 aa20.34■□□□□ 0.85
CLK1-211ENST00000481641 STAMQ92783 540 aa20.34■□□□□ 0.85
CLK1-211ENST00000481641 SNX27Q96L92 541 aa20.34■□□□□ 0.85
CLK1-211ENST00000481641 NTPCRQ9BSD7 190 aaKnown RBP20.34■□□□□ 0.85
CLK1-211ENST00000481641 TIPINQ9BVW5 301 aa20.34■□□□□ 0.85
CLK1-211ENST00000481641 C17orf75Q9HAS0 396 aa20.34■□□□□ 0.85
CLK1-211ENST00000481641 FAM86C1Q9NVL1 165 aa20.34■□□□□ 0.85
CLK1-211ENST00000481641 TMEM189-UBE2V1I3L0A0 370 aa20.33■□□□□ 0.85
CLK1-211ENST00000481641 MCF2P10911 925 aa20.33■□□□□ 0.85
CLK1-211ENST00000481641 OR1D2P34982 312 aa20.33■□□□□ 0.85
CLK1-211ENST00000481641 NTHL1P78549 312 aa20.33■□□□□ 0.85
CLK1-211ENST00000481641 GRIN1Q05586 938 aa20.33■□□□□ 0.85
CLK1-211ENST00000481641 ARSHQ5FYA8 562 aa20.33■□□□□ 0.85
CLK1-211ENST00000481641 GRASPQ7Z6J2 395 aaPredicted RBP20.33■□□□□ 0.85
CLK1-211ENST00000481641 TMEM130Q8N3G9 435 aa20.33■□□□□ 0.85
CLK1-211ENST00000481641 SPIRE2Q8WWL2 714 aa20.33■□□□□ 0.85
CLK1-211ENST00000481641 C18orf25Q96B23 403 aaPredicted RBP20.33■□□□□ 0.85
CLK1-211ENST00000481641 ACAP3Q96P50 834 aa20.33■□□□□ 0.85
CLK1-211ENST00000481641 PRRX2Q99811 253 aa20.33■□□□□ 0.85
CLK1-211ENST00000481641 MFSD1Q9H3U5 465 aa20.33■□□□□ 0.85
CLK1-211ENST00000481641 TOPORSQ9NS56 1045 aaPredicted RBP20.33■□□□□ 0.85
CLK1-211ENST00000481641 ANKFY1Q9P2R3 1169 aa20.33■□□□□ 0.85
CLK1-211ENST00000481641 DUSP12Q9UNI6 340 aa20.33■□□□□ 0.85
CLK1-211ENST00000481641 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.33■□□□□ 0.85
CLK1-211ENST00000481641 CITO14578 2027 aa20.32■□□□□ 0.84
CLK1-211ENST00000481641 CCL16O15467 120 aa20.32■□□□□ 0.84
CLK1-211ENST00000481641 C8AP07357 584 aa20.32■□□□□ 0.84
CLK1-211ENST00000481641 MAPTP10636 758 aaKnown RBP20.32■□□□□ 0.84
CLK1-211ENST00000481641 STRN3Q13033 797 aa20.32■□□□□ 0.84
CLK1-211ENST00000481641 DHX8Q14562 1220 aaKnown RBP20.32■□□□□ 0.84
CLK1-211ENST00000481641 FLCNQ8NFG4 579 aa20.32■□□□□ 0.84
CLK1-211ENST00000481641 DDX27Q96GQ7 796 aaKnown RBP20.32■□□□□ 0.84
CLK1-211ENST00000481641 UROC1Q96N76 676 aa20.32■□□□□ 0.84
CLK1-211ENST00000481641 IGSF9Q9P2J2 1179 aa20.32■□□□□ 0.84
CLK1-211ENST00000481641 EPS15L1Q9UBC2 864 aa20.32■□□□□ 0.84
CLK1-211ENST00000481641 MTRRQ9UBK8 725 aa20.32■□□□□ 0.84
CLK1-211ENST00000481641 CDY1Q9Y6F8 540 aa20.32■□□□□ 0.84
CLK1-211ENST00000481641 CACNA1HO95180 2353 aa20.32■□□□□ 0.84
CLK1-211ENST00000481641 H0Y858 1186 aa20.31■□□□□ 0.84
CLK1-211ENST00000481641 PODXLO00592 558 aa20.31■□□□□ 0.84
CLK1-211ENST00000481641 SMTNP53814 917 aa20.31■□□□□ 0.84
CLK1-211ENST00000481641 RAB33AQ14088 237 aa20.31■□□□□ 0.84
CLK1-211ENST00000481641 PPM1LQ5SGD2 360 aa20.31■□□□□ 0.84
CLK1-211ENST00000481641 LIN9Q5TKA1 542 aa20.31■□□□□ 0.84
CLK1-211ENST00000481641 ASTLQ6HA08 431 aaPredicted RBP20.31■□□□□ 0.84
CLK1-211ENST00000481641 SLC7A14Q8TBB6 771 aa20.31■□□□□ 0.84
CLK1-211ENST00000481641 HAPLN2Q9GZV7 340 aa20.31■□□□□ 0.84
CLK1-211ENST00000481641 FBXL21Q9UKT6 434 aa20.31■□□□□ 0.84
CLK1-211ENST00000481641 POLIQ9UNA4 740 aa20.31■□□□□ 0.84
CLK1-211ENST00000481641 CFHP08603 1231 aa20.3■□□□□ 0.84
CLK1-211ENST00000481641 LAMP2P13473 410 aa20.3■□□□□ 0.84
CLK1-211ENST00000481641 KCNE1P15382 129 aa20.3■□□□□ 0.84
CLK1-211ENST00000481641 NPR3P17342 541 aa20.3■□□□□ 0.84
CLK1-211ENST00000481641 FSHRP23945 695 aa20.3■□□□□ 0.84
CLK1-211ENST00000481641 NOLC1Q14978 699 aaKnown RBP eCLIP20.3■□□□□ 0.84
CLK1-211ENST00000481641 SLC10A6Q3KNW5 377 aa20.3■□□□□ 0.84
CLK1-211ENST00000481641 AXDND1Q5T1B0 1012 aaPredicted RBP20.3■□□□□ 0.84
CLK1-211ENST00000481641 CWF19L1Q69YN2 538 aaKnown RBP20.3■□□□□ 0.84
CLK1-211ENST00000481641 PDXDC1Q6P996 788 aa20.3■□□□□ 0.84
CLK1-211ENST00000481641 GPBP1Q86WP2 473 aa20.3■□□□□ 0.84
CLK1-211ENST00000481641 SIX5Q8N196 739 aa20.3■□□□□ 0.84
CLK1-211ENST00000481641 SLC44A3Q8N4M1 653 aa20.3■□□□□ 0.84
CLK1-211ENST00000481641 REEP2Q9BRK0 252 aa20.3■□□□□ 0.84
CLK1-211ENST00000481641 SLC38A7Q9NVC3 462 aa20.3■□□□□ 0.84
CLK1-211ENST00000481641 CNTN3Q9P232 1028 aa20.3■□□□□ 0.84
CLK1-211ENST00000481641 TRAPPC3O43617 180 aa20.29■□□□□ 0.84
CLK1-211ENST00000481641 PI15O43692 258 aa20.29■□□□□ 0.84
CLK1-211ENST00000481641 TOM1L1O75674 476 aa20.29■□□□□ 0.84
CLK1-211ENST00000481641 UBA7P41226 1012 aa20.29■□□□□ 0.84
CLK1-211ENST00000481641 MATR3P43243 847 aaKnown RBP eCLIP20.29■□□□□ 0.84
CLK1-211ENST00000481641 SPAG1Q07617 926 aa20.29■□□□□ 0.84
CLK1-211ENST00000481641 MCM6Q14566 821 aa20.29■□□□□ 0.84
CLK1-211ENST00000481641 KARSQ15046 597 aaKnown RBP20.29■□□□□ 0.84
CLK1-211ENST00000481641 SF3A1Q15459 793 aaKnown RBP20.29■□□□□ 0.84
CLK1-211ENST00000481641 KCTD17Q8N5Z5 321 aa20.29■□□□□ 0.84
CLK1-211ENST00000481641 CALML4Q96GE6 196 aa20.29■□□□□ 0.84
CLK1-211ENST00000481641 AK8Q96MA6 479 aa20.29■□□□□ 0.84
CLK1-211ENST00000481641 BLOC1S4Q9NUP1 217 aa20.29■□□□□ 0.84
CLK1-211ENST00000481641 HCFC1R1Q9NWW0 138 aa20.29■□□□□ 0.84
CLK1-211ENST00000481641 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.29■□□□□ 0.84
CLK1-211ENST00000481641 KCND2Q9NZV8 630 aa20.29■□□□□ 0.84
CLK1-211ENST00000481641 DAXXQ9UER7 740 aaPredicted RBP20.29■□□□□ 0.84
CLK1-211ENST00000481641 VPS37CA5D8V6 355 aaPredicted RBP20.28■□□□□ 0.84
CLK1-211ENST00000481641 GALR2O43603 387 aaPredicted RBP20.28■□□□□ 0.84
CLK1-211ENST00000481641 HNRNPA1P09651 372 aaKnown RBP eCLIP20.28■□□□□ 0.84
CLK1-211ENST00000481641 PLCG1P19174 1290 aa20.28■□□□□ 0.84
CLK1-211ENST00000481641 NCKAP1LP55160 1127 aa20.28■□□□□ 0.84
CLK1-211ENST00000481641 CUL4AQ13619 759 aa20.28■□□□□ 0.84
CLK1-211ENST00000481641 ANKS3Q6ZW76 656 aa20.28■□□□□ 0.84
CLK1-211ENST00000481641 HAUS6Q7Z4H7 955 aa20.28■□□□□ 0.84
CLK1-211ENST00000481641 ATOH1Q92858 354 aaPredicted RBP20.28■□□□□ 0.84
CLK1-211ENST00000481641 BICD1Q96G01 975 aa20.28■□□□□ 0.84
CLK1-211ENST00000481641 RPP25Q9BUL9 199 aaKnown RBP20.28■□□□□ 0.84
CLK1-211ENST00000481641 BACE2Q9Y5Z0 518 aa20.28■□□□□ 0.84
CLK1-211ENST00000481641 NOTCH4Q99466 2003 aa20.27■□□□□ 0.84
CLK1-211ENST00000481641 PDCD11Q14690 1871 aaKnown RBP20.27■□□□□ 0.84
CLK1-211ENST00000481641 CLDN3O15551 220 aa20.27■□□□□ 0.84
CLK1-211ENST00000481641 CXCL8P10145 99 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms