RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 CEP120Q8N960 986 aa22.3■■□□□ 1.16
PDLIM4-206ENST00000474421 CALML4Q96GE6 196 aa22.3■■□□□ 1.16
PDLIM4-206ENST00000474421 LARSQ9P2J5 1176 aaKnown RBP22.3■■□□□ 1.16
PDLIM4-206ENST00000474421 DOCK8Q8NF50 2099 aa22.3■■□□□ 1.16
PDLIM4-206ENST00000474421 TOM1L1O75674 476 aa22.29■■□□□ 1.16
PDLIM4-206ENST00000474421 SCP2P22307 547 aa22.29■■□□□ 1.16
PDLIM4-206ENST00000474421 UBA7P41226 1012 aa22.29■■□□□ 1.16
PDLIM4-206ENST00000474421 OSTNP61366 133 aa22.29■■□□□ 1.16
PDLIM4-206ENST00000474421 RAD51AP2Q09MP3 1159 aa22.29■■□□□ 1.16
PDLIM4-206ENST00000474421 ZPBP2Q6X784 338 aa22.29■■□□□ 1.16
PDLIM4-206ENST00000474421 RTL10Q7L3V2 364 aa22.29■■□□□ 1.16
PDLIM4-206ENST00000474421 ALYREFQ86V81 257 aaKnown RBP22.29■■□□□ 1.16
PDLIM4-206ENST00000474421 TMEM161BQ8NDZ6 487 aa22.29■■□□□ 1.16
PDLIM4-206ENST00000474421 PLIN2Q99541 437 aa22.29■■□□□ 1.16
PDLIM4-206ENST00000474421 MFSD1Q9H3U5 465 aa22.29■■□□□ 1.16
PDLIM4-206ENST00000474421 SMOC2Q9H3U7 446 aa22.29■■□□□ 1.16
PDLIM4-206ENST00000474421 DUSP12Q9UNI6 340 aa22.29■■□□□ 1.16
PDLIM4-206ENST00000474421 N4BP1O75113 896 aaKnown RBP22.28■■□□□ 1.16
PDLIM4-206ENST00000474421 PDGFBP01127 241 aaPredicted RBP22.28■■□□□ 1.16
PDLIM4-206ENST00000474421 MAPTP10636 758 aaKnown RBP22.28■■□□□ 1.16
PDLIM4-206ENST00000474421 KCNE1P15382 129 aa22.28■■□□□ 1.16
PDLIM4-206ENST00000474421 HOXA9P31269 272 aa22.28■■□□□ 1.16
PDLIM4-206ENST00000474421 RAB33AQ14088 237 aa22.28■■□□□ 1.16
PDLIM4-206ENST00000474421 NOLC1Q14978 699 aaKnown RBP eCLIP22.28■■□□□ 1.16
PDLIM4-206ENST00000474421 PPM1LQ5SGD2 360 aa22.28■■□□□ 1.16
PDLIM4-206ENST00000474421 ANKS3Q6ZW76 656 aa22.28■■□□□ 1.16
PDLIM4-206ENST00000474421 SNX27Q96L92 541 aa22.28■■□□□ 1.16
PDLIM4-206ENST00000474421 CNTN3Q9P232 1028 aa22.28■■□□□ 1.16
PDLIM4-206ENST00000474421 MTRRQ9UBK8 725 aa22.28■■□□□ 1.16
PDLIM4-206ENST00000474421 ODF2LQ9ULJ1 636 aa22.28■■□□□ 1.16
PDLIM4-206ENST00000474421 BACE2Q9Y5Z0 518 aa22.28■■□□□ 1.16
PDLIM4-206ENST00000474421 ZFP37Q9Y6Q3 630 aaPredicted RBP22.28■■□□□ 1.16
PDLIM4-206ENST00000474421 ABLIM1O14639 778 aa22.27■■□□□ 1.16
PDLIM4-206ENST00000474421 XYLBO75191 536 aa22.27■■□□□ 1.16
PDLIM4-206ENST00000474421 C8AP07357 584 aa22.27■■□□□ 1.16
PDLIM4-206ENST00000474421 PDCP20941 246 aa22.27■■□□□ 1.16
PDLIM4-206ENST00000474421 RPL9P32969 192 aaKnown RBP22.27■■□□□ 1.16
PDLIM4-206ENST00000474421 MRE11P49959 708 aa22.27■■□□□ 1.16
PDLIM4-206ENST00000474421 UVSSAQ2YD98 709 aa22.27■■□□□ 1.16
PDLIM4-206ENST00000474421 MYADMQ96S97 322 aa22.27■■□□□ 1.16
PDLIM4-206ENST00000474421 ANKFY1Q9P2R3 1169 aa22.27■■□□□ 1.16
PDLIM4-206ENST00000474421 PODXLO00592 558 aa22.26■■□□□ 1.15
PDLIM4-206ENST00000474421 CLDN3O15551 220 aa22.26■■□□□ 1.15
PDLIM4-206ENST00000474421 POU2F2P09086 479 aa22.26■■□□□ 1.15
PDLIM4-206ENST00000474421 HARSP12081 509 aaKnown RBP22.26■■□□□ 1.15
PDLIM4-206ENST00000474421 OR1D2P34982 312 aa22.26■■□□□ 1.15
PDLIM4-206ENST00000474421 LONP1P36776 959 aaKnown RBP22.26■■□□□ 1.15
PDLIM4-206ENST00000474421 CLCN5P51795 746 aa22.26■■□□□ 1.15
PDLIM4-206ENST00000474421 TCF15Q12870 199 aa22.26■■□□□ 1.15
PDLIM4-206ENST00000474421 ASTLQ6HA08 431 aaPredicted RBP22.26■■□□□ 1.15
PDLIM4-206ENST00000474421 KCNN1Q92952 543 aa22.26■■□□□ 1.15
PDLIM4-206ENST00000474421 GOLGA2P5Q9HBQ8 144 aa22.26■■□□□ 1.15
PDLIM4-206ENST00000474421 FBXL21Q9UKT6 434 aa22.26■■□□□ 1.15
PDLIM4-206ENST00000474421 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.26■■□□□ 1.15
PDLIM4-206ENST00000474421 CACNA1HO95180 2353 aa22.26■■□□□ 1.15
PDLIM4-206ENST00000474421 ADAM12O43184 909 aa22.25■■□□□ 1.15
PDLIM4-206ENST00000474421 FSHRP23945 695 aa22.25■■□□□ 1.15
PDLIM4-206ENST00000474421 SOX4Q06945 474 aaPredicted RBP22.25■■□□□ 1.15
PDLIM4-206ENST00000474421 CUL4AQ13619 759 aa22.25■■□□□ 1.15
PDLIM4-206ENST00000474421 ARSHQ5FYA8 562 aa22.25■■□□□ 1.15
PDLIM4-206ENST00000474421 CD300LGQ6UXG3 332 aa22.25■■□□□ 1.15
PDLIM4-206ENST00000474421 GET4Q7L5D6 327 aaPredicted RBP22.25■■□□□ 1.15
PDLIM4-206ENST00000474421 RASSF8Q8NHQ8 419 aa22.25■■□□□ 1.15
PDLIM4-206ENST00000474421 ZBTB45Q96K62 511 aaPredicted RBP22.25■■□□□ 1.15
PDLIM4-206ENST00000474421 ZMAT2Q96NC0 199 aaKnown RBP22.25■■□□□ 1.15
PDLIM4-206ENST00000474421 CDY1Q9Y6F8 540 aa22.25■■□□□ 1.15
PDLIM4-206ENST00000474421 PDCD11Q14690 1871 aaKnown RBP22.24■■□□□ 1.15
PDLIM4-206ENST00000474421 SYN3O14994 580 aa22.24■■□□□ 1.15
PDLIM4-206ENST00000474421 LAMP2P13473 410 aa22.24■■□□□ 1.15
PDLIM4-206ENST00000474421 TKTP29401 623 aaKnown RBP22.24■■□□□ 1.15
PDLIM4-206ENST00000474421 MATR3P43243 847 aaKnown RBP eCLIP22.24■■□□□ 1.15
PDLIM4-206ENST00000474421 NCKAP1LP55160 1127 aa22.24■■□□□ 1.15
PDLIM4-206ENST00000474421 MCL1Q07820 350 aa22.24■■□□□ 1.15
PDLIM4-206ENST00000474421 KYAT1Q16773 422 aa22.24■■□□□ 1.15
PDLIM4-206ENST00000474421 AXDND1Q5T1B0 1012 aaPredicted RBP22.24■■□□□ 1.15
PDLIM4-206ENST00000474421 GPBP1Q86WP2 473 aa22.24■■□□□ 1.15
PDLIM4-206ENST00000474421 C3orf58Q8NDZ4 430 aa22.24■■□□□ 1.15
PDLIM4-206ENST00000474421 SLC7A14Q8TBB6 771 aa22.24■■□□□ 1.15
PDLIM4-206ENST00000474421 BICD1Q96G01 975 aa22.24■■□□□ 1.15
PDLIM4-206ENST00000474421 PLEKHA5Q9HAU0 1116 aa22.24■■□□□ 1.15
PDLIM4-206ENST00000474421 NUB1Q9Y5A7 615 aa22.24■■□□□ 1.15
PDLIM4-206ENST00000474421 DOCK6Q96HP0 2047 aa22.24■■□□□ 1.15
PDLIM4-206ENST00000474421 NPHP3-ACAD11A0A0J9YXS1 232 aa22.23■■□□□ 1.15
PDLIM4-206ENST00000474421 VPS37CA5D8V6 355 aaPredicted RBP22.23■■□□□ 1.15
PDLIM4-206ENST00000474421 GALR2O43603 387 aaPredicted RBP22.23■■□□□ 1.15
PDLIM4-206ENST00000474421 ABCD1P33897 745 aa22.23■■□□□ 1.15
PDLIM4-206ENST00000474421 BRCC3P46736 316 aa22.23■■□□□ 1.15
PDLIM4-206ENST00000474421 SF3A1Q15459 793 aaKnown RBP22.23■■□□□ 1.15
PDLIM4-206ENST00000474421 HAUS6Q7Z4H7 955 aa22.23■■□□□ 1.15
PDLIM4-206ENST00000474421 GRASPQ7Z6J2 395 aaPredicted RBP22.23■■□□□ 1.15
PDLIM4-206ENST00000474421 REEP2Q9BRK0 252 aa22.23■■□□□ 1.15
PDLIM4-206ENST00000474421 PARVGQ9HBI0 331 aa22.23■■□□□ 1.15
PDLIM4-206ENST00000474421 WNT16Q9UBV4 365 aa22.23■■□□□ 1.15
PDLIM4-206ENST00000474421 H7C4K7 107 aa22.22■■□□□ 1.15
PDLIM4-206ENST00000474421 I3L4J1 428 aa22.22■■□□□ 1.15
PDLIM4-206ENST00000474421 FAM13AO94988 1023 aa22.22■■□□□ 1.15
PDLIM4-206ENST00000474421 KRT18P05783 430 aaKnown RBP22.22■■□□□ 1.15
PDLIM4-206ENST00000474421 CLTAP09496 248 aa22.22■■□□□ 1.15
PDLIM4-206ENST00000474421 SRFP11831 508 aa22.22■■□□□ 1.15
PDLIM4-206ENST00000474421 IGFBP6P24592 240 aaPredicted RBP22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms